miRNA display CGI


Results 41 - 60 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9010 3' -55.8 NC_002512.2 + 111808 0.67 0.944746
Target:  5'- --cGC-CGGCGccggaGCCGCCCCcUCcgCGg -3'
miRNA:   3'- gcaCGaGCCGU-----UGGUGGGGuAGuaGC- -5'
9010 3' -55.8 NC_002512.2 + 192275 0.67 0.944746
Target:  5'- gCGUGCUCGGgAcgcuCUGCgUCGUCAUCc -3'
miRNA:   3'- -GCACGAGCCgUu---GGUGgGGUAGUAGc -5'
9010 3' -55.8 NC_002512.2 + 179484 0.67 0.948957
Target:  5'- -cUGCuUCGGCGGCgucguCGCCaUCGUCGUCGg -3'
miRNA:   3'- gcACG-AGCCGUUG-----GUGG-GGUAGUAGC- -5'
9010 3' -55.8 NC_002512.2 + 97607 0.67 0.948957
Target:  5'- cCGUGUucUCGGUGugCGCCgCCAuguacccgaUCAUCa -3'
miRNA:   3'- -GCACG--AGCCGUugGUGG-GGU---------AGUAGc -5'
9010 3' -55.8 NC_002512.2 + 219244 0.67 0.944746
Target:  5'- uCGUGCUCGGCcGCCucugGCUgC-UCGUCc -3'
miRNA:   3'- -GCACGAGCCGuUGG----UGGgGuAGUAGc -5'
9010 3' -55.8 NC_002512.2 + 223573 0.67 0.944746
Target:  5'- --cGCgggCGGCGGCCACCUCGaCGUg- -3'
miRNA:   3'- gcaCGa--GCCGUUGGUGGGGUaGUAgc -5'
9010 3' -55.8 NC_002512.2 + 156170 0.67 0.930775
Target:  5'- uCGcUGCUCGagcGCGACCAgCUCAUgGUCa -3'
miRNA:   3'- -GC-ACGAGC---CGUUGGUgGGGUAgUAGc -5'
9010 3' -55.8 NC_002512.2 + 224718 0.67 0.948957
Target:  5'- --gGC-CGGCcGCCGCCCCG--GUCGc -3'
miRNA:   3'- gcaCGaGCCGuUGGUGGGGUagUAGC- -5'
9010 3' -55.8 NC_002512.2 + 68594 0.67 0.940313
Target:  5'- gGUGCUCGucguaggccaGCGACuCGCCCaCGUCAg-- -3'
miRNA:   3'- gCACGAGC----------CGUUG-GUGGG-GUAGUagc -5'
9010 3' -55.8 NC_002512.2 + 22133 0.67 0.935656
Target:  5'- aCG-GCggCGGCu-CCACCCCGgagCGUCc -3'
miRNA:   3'- -GCaCGa-GCCGuuGGUGGGGUa--GUAGc -5'
9010 3' -55.8 NC_002512.2 + 29613 0.67 0.930775
Target:  5'- aCG-GCUCGuCGuCCucguCCCCGUCGUCGu -3'
miRNA:   3'- -GCaCGAGCcGUuGGu---GGGGUAGUAGC- -5'
9010 3' -55.8 NC_002512.2 + 118655 0.67 0.925669
Target:  5'- --cGCUCcgGGCGcccgGCCG-CCCGUCAUCGu -3'
miRNA:   3'- gcaCGAG--CCGU----UGGUgGGGUAGUAGC- -5'
9010 3' -55.8 NC_002512.2 + 65074 0.68 0.896776
Target:  5'- cCG-GCUCGGCucuCCAgUCCCGUCG-CGa -3'
miRNA:   3'- -GCaCGAGCCGuu-GGU-GGGGUAGUaGC- -5'
9010 3' -55.8 NC_002512.2 + 140075 0.68 0.919792
Target:  5'- aCGUccuCUCGGCGcucaucgGCgACCCCGUCcuGUCGg -3'
miRNA:   3'- -GCAc--GAGCCGU-------UGgUGGGGUAG--UAGC- -5'
9010 3' -55.8 NC_002512.2 + 117738 0.68 0.914781
Target:  5'- cCG-GCUCGccguCGACCGCCUCGUCuUCGc -3'
miRNA:   3'- -GCaCGAGCc---GUUGGUGGGGUAGuAGC- -5'
9010 3' -55.8 NC_002512.2 + 103432 0.68 0.914781
Target:  5'- aCG-GCgaacaaGGCGGCCGCCgCCGUCGcCGg -3'
miRNA:   3'- -GCaCGag----CCGUUGGUGG-GGUAGUaGC- -5'
9010 3' -55.8 NC_002512.2 + 28080 0.68 0.902999
Target:  5'- gCG-GCggagaCGGCGgagaggucGCCGCCCCGUCcgCGc -3'
miRNA:   3'- -GCaCGa----GCCGU--------UGGUGGGGUAGuaGC- -5'
9010 3' -55.8 NC_002512.2 + 99096 0.68 0.896776
Target:  5'- gCGUGCugcgcgUCGGCGGCCcuCCUCGUgGUCc -3'
miRNA:   3'- -GCACG------AGCCGUUGGu-GGGGUAgUAGc -5'
9010 3' -55.8 NC_002512.2 + 139886 0.68 0.890336
Target:  5'- uCGUGCUCcGCuACCugCUgcaCGUCGUCGu -3'
miRNA:   3'- -GCACGAGcCGuUGGugGG---GUAGUAGC- -5'
9010 3' -55.8 NC_002512.2 + 90930 0.68 0.890336
Target:  5'- aCGggGC-CGGCGcgGCCGCCgCCGUCGUgGu -3'
miRNA:   3'- -GCa-CGaGCCGU--UGGUGG-GGUAGUAgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.