miRNA display CGI


Results 21 - 40 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9010 3' -55.8 NC_002512.2 + 39345 0.66 0.960293
Target:  5'- gGUGCcCaGCAGCCggucccucGCCCCGaccagcUCGUCGa -3'
miRNA:   3'- gCACGaGcCGUUGG--------UGGGGU------AGUAGC- -5'
9010 3' -55.8 NC_002512.2 + 196706 0.66 0.964935
Target:  5'- -cUGUUCGGUuccgugaucgagaagAACCGCUUCGUCGUCc -3'
miRNA:   3'- gcACGAGCCG---------------UUGGUGGGGUAGUAGc -5'
9010 3' -55.8 NC_002512.2 + 217583 0.66 0.96365
Target:  5'- cCG-GUcCGGCGgcGCCGCCUCggggGUCGUCGg -3'
miRNA:   3'- -GCaCGaGCCGU--UGGUGGGG----UAGUAGC- -5'
9010 3' -55.8 NC_002512.2 + 220008 0.66 0.966803
Target:  5'- --cGCcCGGCGggucgagagGCCGCUCCGUC-UCGg -3'
miRNA:   3'- gcaCGaGCCGU---------UGGUGGGGUAGuAGC- -5'
9010 3' -55.8 NC_002512.2 + 186409 0.66 0.966803
Target:  5'- gCGUcCUCGGCuuCCACgCCGUgcUCGg -3'
miRNA:   3'- -GCAcGAGCCGuuGGUGgGGUAguAGC- -5'
9010 3' -55.8 NC_002512.2 + 167429 0.66 0.966803
Target:  5'- uCGUGCggCGGCAcGCCugCgCGuUCGUCc -3'
miRNA:   3'- -GCACGa-GCCGU-UGGugGgGU-AGUAGc -5'
9010 3' -55.8 NC_002512.2 + 143513 0.66 0.96365
Target:  5'- cCGUGCUCuccagGGCGcgccugGCgGCCUCGUCgccGUCGg -3'
miRNA:   3'- -GCACGAG-----CCGU------UGgUGGGGUAG---UAGC- -5'
9010 3' -55.8 NC_002512.2 + 195725 0.66 0.96365
Target:  5'- aCGUGgaaggggagCGGgAACCGCUCCGaggUCGUCGg -3'
miRNA:   3'- -GCACga-------GCCgUUGGUGGGGU---AGUAGC- -5'
9010 3' -55.8 NC_002512.2 + 183576 0.66 0.96365
Target:  5'- --cGCUCGGguGCaccaACUCCAUCA-CGc -3'
miRNA:   3'- gcaCGAGCCguUGg---UGGGGUAGUaGC- -5'
9010 3' -55.8 NC_002512.2 + 110542 0.67 0.948957
Target:  5'- cCGUGaC-CGGCGuuuCCGCCCCcgCG-CGg -3'
miRNA:   3'- -GCAC-GaGCCGUu--GGUGGGGuaGUaGC- -5'
9010 3' -55.8 NC_002512.2 + 63483 0.67 0.948957
Target:  5'- --gGCUCGGCAggACCAUCCCccgggCGg -3'
miRNA:   3'- gcaCGAGCCGU--UGGUGGGGuaguaGC- -5'
9010 3' -55.8 NC_002512.2 + 118231 0.67 0.944746
Target:  5'- uCGUGCUCGGgGACgGCaCCGUCcUgGa -3'
miRNA:   3'- -GCACGAGCCgUUGgUGgGGUAGuAgC- -5'
9010 3' -55.8 NC_002512.2 + 118818 0.67 0.940313
Target:  5'- uCGUGgUCGGCGACCGCgaggUCC-UCAgcgCGu -3'
miRNA:   3'- -GCACgAGCCGUUGGUG----GGGuAGUa--GC- -5'
9010 3' -55.8 NC_002512.2 + 68594 0.67 0.940313
Target:  5'- gGUGCUCGucguaggccaGCGACuCGCCCaCGUCAg-- -3'
miRNA:   3'- gCACGAGC----------CGUUG-GUGGG-GUAGUagc -5'
9010 3' -55.8 NC_002512.2 + 29613 0.67 0.930775
Target:  5'- aCG-GCUCGuCGuCCucguCCCCGUCGUCGu -3'
miRNA:   3'- -GCaCGAGCcGUuGGu---GGGGUAGUAGC- -5'
9010 3' -55.8 NC_002512.2 + 118655 0.67 0.925669
Target:  5'- --cGCUCcgGGCGcccgGCCG-CCCGUCAUCGu -3'
miRNA:   3'- gcaCGAG--CCGU----UGGUgGGGUAGUAGC- -5'
9010 3' -55.8 NC_002512.2 + 97607 0.67 0.948957
Target:  5'- cCGUGUucUCGGUGugCGCCgCCAuguacccgaUCAUCa -3'
miRNA:   3'- -GCACG--AGCCGUugGUGG-GGU---------AGUAGc -5'
9010 3' -55.8 NC_002512.2 + 183423 0.67 0.948957
Target:  5'- gCGUGCUCGuCAGCCucuuCUUCGUC-UCGa -3'
miRNA:   3'- -GCACGAGCcGUUGGu---GGGGUAGuAGC- -5'
9010 3' -55.8 NC_002512.2 + 224718 0.67 0.948957
Target:  5'- --gGC-CGGCcGCCGCCCCG--GUCGc -3'
miRNA:   3'- gcaCGaGCCGuUGGUGGGGUagUAGC- -5'
9010 3' -55.8 NC_002512.2 + 22133 0.67 0.935656
Target:  5'- aCG-GCggCGGCu-CCACCCCGgagCGUCc -3'
miRNA:   3'- -GCaCGa-GCCGuuGGUGGGGUa--GUAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.