miRNA display CGI


Results 21 - 40 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9010 3' -55.8 NC_002512.2 + 96231 0.71 0.788979
Target:  5'- gCGgcgGCggCGGCGACCGCCCCGgacUCcgCc -3'
miRNA:   3'- -GCa--CGa-GCCGUUGGUGGGGU---AGuaGc -5'
9010 3' -55.8 NC_002512.2 + 134242 0.71 0.788979
Target:  5'- uGUGCcgggggCGGCcgAGCCGCCCCcuggccuUCGUCGu -3'
miRNA:   3'- gCACGa-----GCCG--UUGGUGGGGu------AGUAGC- -5'
9010 3' -55.8 NC_002512.2 + 82245 0.71 0.788979
Target:  5'- gGUaGCggGaGCGGCCGCCgCCGUCGUCGu -3'
miRNA:   3'- gCA-CGagC-CGUUGGUGG-GGUAGUAGC- -5'
9010 3' -55.8 NC_002512.2 + 21513 0.71 0.788979
Target:  5'- --aGCgUCGG--GCCACCUCGUCGUCGa -3'
miRNA:   3'- gcaCG-AGCCguUGGUGGGGUAGUAGC- -5'
9010 3' -55.8 NC_002512.2 + 38537 0.71 0.788979
Target:  5'- gGUcGCgCGGCGACCuacCCCCGUCG-CGg -3'
miRNA:   3'- gCA-CGaGCCGUUGGu--GGGGUAGUaGC- -5'
9010 3' -55.8 NC_002512.2 + 150147 0.71 0.79778
Target:  5'- uCGUG-UCGGCGuccGCCAgCCCGUCcUCGc -3'
miRNA:   3'- -GCACgAGCCGU---UGGUgGGGUAGuAGC- -5'
9010 3' -55.8 NC_002512.2 + 110685 0.7 0.814949
Target:  5'- gGUGCUCGcGCAGCCGCCgCAg----- -3'
miRNA:   3'- gCACGAGC-CGUUGGUGGgGUaguagc -5'
9010 3' -55.8 NC_002512.2 + 184415 0.7 0.81831
Target:  5'- --cGCUCGGCcuucuccgucgccucGGCCGCCgCCggCGUCGg -3'
miRNA:   3'- gcaCGAGCCG---------------UUGGUGG-GGuaGUAGC- -5'
9010 3' -55.8 NC_002512.2 + 184748 0.7 0.823303
Target:  5'- aCGUGaggaUCGGCGGgCGgCCCGUgGUCGu -3'
miRNA:   3'- -GCACg---AGCCGUUgGUgGGGUAgUAGC- -5'
9010 3' -55.8 NC_002512.2 + 166026 0.7 0.831492
Target:  5'- aCGcGUUCGGCGGCCGuuCCgggGUCAUCa -3'
miRNA:   3'- -GCaCGAGCCGUUGGUggGG---UAGUAGc -5'
9010 3' -55.8 NC_002512.2 + 129388 0.7 0.839511
Target:  5'- gGUGCUCGacgaccGCGGCCuCCCCAagGUCc -3'
miRNA:   3'- gCACGAGC------CGUUGGuGGGGUagUAGc -5'
9010 3' -55.8 NC_002512.2 + 87539 0.69 0.85501
Target:  5'- cCGUuCUCGGCucCCACCCCG-CGUUc -3'
miRNA:   3'- -GCAcGAGCCGuuGGUGGGGUaGUAGc -5'
9010 3' -55.8 NC_002512.2 + 107468 0.69 0.862477
Target:  5'- gCGUcCUCGGUggauuuguugAACCA-CCCGUCGUCGa -3'
miRNA:   3'- -GCAcGAGCCG----------UUGGUgGGGUAGUAGC- -5'
9010 3' -55.8 NC_002512.2 + 106733 0.69 0.862477
Target:  5'- uCGgcgGCgaucgCGGCGccGCCGCCCCGUCcccCGg -3'
miRNA:   3'- -GCa--CGa----GCCGU--UGGUGGGGUAGua-GC- -5'
9010 3' -55.8 NC_002512.2 + 209787 0.69 0.862477
Target:  5'- --aGCcCGGCGGCUACUUCAUgGUCGg -3'
miRNA:   3'- gcaCGaGCCGUUGGUGGGGUAgUAGC- -5'
9010 3' -55.8 NC_002512.2 + 23025 0.69 0.869748
Target:  5'- --aGCUCGGC-GCCGCCCCcgaagaagAUCGUg- -3'
miRNA:   3'- gcaCGAGCCGuUGGUGGGG--------UAGUAgc -5'
9010 3' -55.8 NC_002512.2 + 193084 0.69 0.869748
Target:  5'- uGUGCUgCGGCGaguGCCGCUUCAUCuccgCGc -3'
miRNA:   3'- gCACGA-GCCGU---UGGUGGGGUAGua--GC- -5'
9010 3' -55.8 NC_002512.2 + 154757 0.69 0.869748
Target:  5'- gGUGg-CGGUGACCACCaCCAgcagCAUCa -3'
miRNA:   3'- gCACgaGCCGUUGGUGG-GGUa---GUAGc -5'
9010 3' -55.8 NC_002512.2 + 98727 0.69 0.869748
Target:  5'- aCGgGCUCGGCcgcuuccucucGGCCgcccuGCCCCGcCAUCGg -3'
miRNA:   3'- -GCaCGAGCCG-----------UUGG-----UGGGGUaGUAGC- -5'
9010 3' -55.8 NC_002512.2 + 192597 0.69 0.869748
Target:  5'- aCGUGUUCGGCccgaAACCggaACCCUGUgCGUUGg -3'
miRNA:   3'- -GCACGAGCCG----UUGG---UGGGGUA-GUAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.