miRNA display CGI


Results 21 - 40 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9010 3' -55.8 NC_002512.2 + 69528 0.73 0.67537
Target:  5'- cCGUGCgaGGCAuugaGCUGCCUCAUCGUCa -3'
miRNA:   3'- -GCACGagCCGU----UGGUGGGGUAGUAGc -5'
9010 3' -55.8 NC_002512.2 + 72439 0.73 0.665489
Target:  5'- aGUGCauaaCGGCAAUCAUaUCCAUCAUCGu -3'
miRNA:   3'- gCACGa---GCCGUUGGUG-GGGUAGUAGC- -5'
9010 3' -55.8 NC_002512.2 + 72651 0.69 0.869748
Target:  5'- aCG-GCUCGGCGAUCugUCCucggUGUCGa -3'
miRNA:   3'- -GCaCGAGCCGUUGGugGGGua--GUAGC- -5'
9010 3' -55.8 NC_002512.2 + 74511 0.66 0.95295
Target:  5'- --cGC-CGGCGccGCCGCCCCGaCcUCGa -3'
miRNA:   3'- gcaCGaGCCGU--UGGUGGGGUaGuAGC- -5'
9010 3' -55.8 NC_002512.2 + 74587 0.66 0.96365
Target:  5'- gGUGCUCgaGGCcggGGCC-CUCCGUCGgcUCGa -3'
miRNA:   3'- gCACGAG--CCG---UUGGuGGGGUAGU--AGC- -5'
9010 3' -55.8 NC_002512.2 + 79629 0.66 0.956728
Target:  5'- gGUaCUCGGCGuCguCCCCcUCGUCGu -3'
miRNA:   3'- gCAcGAGCCGUuGguGGGGuAGUAGC- -5'
9010 3' -55.8 NC_002512.2 + 79819 0.72 0.714479
Target:  5'- aCGgcgGCggCGGCGGuccccccucCCGCCCCGUCGUCc -3'
miRNA:   3'- -GCa--CGa-GCCGUU---------GGUGGGGUAGUAGc -5'
9010 3' -55.8 NC_002512.2 + 81369 0.73 0.695024
Target:  5'- cCGggGCgggCGGCGGCCGCCUCcUCGUCc -3'
miRNA:   3'- -GCa-CGa--GCCGUUGGUGGGGuAGUAGc -5'
9010 3' -55.8 NC_002512.2 + 82245 0.71 0.788979
Target:  5'- gGUaGCggGaGCGGCCGCCgCCGUCGUCGu -3'
miRNA:   3'- gCA-CGagC-CGUUGGUGG-GGUAGUAGC- -5'
9010 3' -55.8 NC_002512.2 + 82923 0.72 0.724112
Target:  5'- aGU-CUCGGCcGCgGCCgCCGUCGUCGc -3'
miRNA:   3'- gCAcGAGCCGuUGgUGG-GGUAGUAGC- -5'
9010 3' -55.8 NC_002512.2 + 83162 0.74 0.625788
Target:  5'- cCGgcgGCcgCGGCcGCCGCCCCGcCGUCGu -3'
miRNA:   3'- -GCa--CGa-GCCGuUGGUGGGGUaGUAGC- -5'
9010 3' -55.8 NC_002512.2 + 84785 0.66 0.956728
Target:  5'- cCGUGUcggcCGGCAGCCgcgacGCCUCGcggaacUCGUCGa -3'
miRNA:   3'- -GCACGa---GCCGUUGG-----UGGGGU------AGUAGC- -5'
9010 3' -55.8 NC_002512.2 + 87207 0.72 0.756254
Target:  5'- aGUGCUCGGUGACgGCCCuCGUgcccguguauuuccaCAUCa -3'
miRNA:   3'- gCACGAGCCGUUGgUGGG-GUA---------------GUAGc -5'
9010 3' -55.8 NC_002512.2 + 87539 0.69 0.85501
Target:  5'- cCGUuCUCGGCucCCACCCCG-CGUUc -3'
miRNA:   3'- -GCAcGAGCCGuuGGUGGGGUaGUAGc -5'
9010 3' -55.8 NC_002512.2 + 90930 0.68 0.890336
Target:  5'- aCGggGC-CGGCGcgGCCGCCgCCGUCGUgGu -3'
miRNA:   3'- -GCa-CGaGCCGU--UGGUGG-GGUAGUAgC- -5'
9010 3' -55.8 NC_002512.2 + 96085 0.67 0.943439
Target:  5'- --cGCaccCGGCGcgaccgucguccccGCCGCCgCCGUCGUCGu -3'
miRNA:   3'- gcaCGa--GCCGU--------------UGGUGG-GGUAGUAGC- -5'
9010 3' -55.8 NC_002512.2 + 96231 0.71 0.788979
Target:  5'- gCGgcgGCggCGGCGACCGCCCCGgacUCcgCc -3'
miRNA:   3'- -GCa--CGa-GCCGUUGGUGGGGU---AGuaGc -5'
9010 3' -55.8 NC_002512.2 + 97607 0.67 0.948957
Target:  5'- cCGUGUucUCGGUGugCGCCgCCAuguacccgaUCAUCa -3'
miRNA:   3'- -GCACG--AGCCGUugGUGG-GGU---------AGUAGc -5'
9010 3' -55.8 NC_002512.2 + 98158 0.77 0.480805
Target:  5'- cCG-GUUCGGCGGucCCGCgCCCGUCAUCGu -3'
miRNA:   3'- -GCaCGAGCCGUU--GGUG-GGGUAGUAGC- -5'
9010 3' -55.8 NC_002512.2 + 98727 0.69 0.869748
Target:  5'- aCGgGCUCGGCcgcuuccucucGGCCgcccuGCCCCGcCAUCGg -3'
miRNA:   3'- -GCaCGAGCCG-----------UUGG-----UGGGGUaGUAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.