miRNA display CGI


Results 1 - 20 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9010 3' -55.8 NC_002512.2 + 11929 0.66 0.954487
Target:  5'- --cGCUCGGCAAauaggcagucguuccCCGCCCCG--GUCc -3'
miRNA:   3'- gcaCGAGCCGUU---------------GGUGGGGUagUAGc -5'
9010 3' -55.8 NC_002512.2 + 18693 0.68 0.890336
Target:  5'- uCGUGggCGGCGGgCACCCCGagCAgggCGg -3'
miRNA:   3'- -GCACgaGCCGUUgGUGGGGUa-GUa--GC- -5'
9010 3' -55.8 NC_002512.2 + 19367 0.72 0.743145
Target:  5'- uCGgggGCUCGGCGGCCucGCgCUcgCGUCGg -3'
miRNA:   3'- -GCa--CGAGCCGUUGG--UGgGGuaGUAGC- -5'
9010 3' -55.8 NC_002512.2 + 20855 0.66 0.960293
Target:  5'- --cGCUCcgggacGCGGCCGCCCCGcUCAUgGc -3'
miRNA:   3'- gcaCGAGc-----CGUUGGUGGGGU-AGUAgC- -5'
9010 3' -55.8 NC_002512.2 + 21513 0.71 0.788979
Target:  5'- --aGCgUCGG--GCCACCUCGUCGUCGa -3'
miRNA:   3'- gcaCG-AGCCguUGGUGGGGUAGUAGC- -5'
9010 3' -55.8 NC_002512.2 + 22133 0.67 0.935656
Target:  5'- aCG-GCggCGGCu-CCACCCCGgagCGUCc -3'
miRNA:   3'- -GCaCGa-GCCGuuGGUGGGGUa--GUAGc -5'
9010 3' -55.8 NC_002512.2 + 23025 0.69 0.869748
Target:  5'- --aGCUCGGC-GCCGCCCCcgaagaagAUCGUg- -3'
miRNA:   3'- gcaCGAGCCGuUGGUGGGG--------UAGUAgc -5'
9010 3' -55.8 NC_002512.2 + 25230 0.66 0.96365
Target:  5'- --cGC-CGGCGAUC-CCCCGcgCGUCGc -3'
miRNA:   3'- gcaCGaGCCGUUGGuGGGGUa-GUAGC- -5'
9010 3' -55.8 NC_002512.2 + 28080 0.68 0.902999
Target:  5'- gCG-GCggagaCGGCGgagaggucGCCGCCCCGUCcgCGc -3'
miRNA:   3'- -GCaCGa----GCCGU--------UGGUGGGGUAGuaGC- -5'
9010 3' -55.8 NC_002512.2 + 29613 0.67 0.930775
Target:  5'- aCG-GCUCGuCGuCCucguCCCCGUCGUCGu -3'
miRNA:   3'- -GCaCGAGCcGUuGGu---GGGGUAGUAGC- -5'
9010 3' -55.8 NC_002512.2 + 37234 0.66 0.95295
Target:  5'- --aGUggGGCAGCCGCCCCcgCGa-- -3'
miRNA:   3'- gcaCGagCCGUUGGUGGGGuaGUagc -5'
9010 3' -55.8 NC_002512.2 + 38537 0.71 0.788979
Target:  5'- gGUcGCgCGGCGACCuacCCCCGUCG-CGg -3'
miRNA:   3'- gCA-CGaGCCGUUGGu--GGGGUAGUaGC- -5'
9010 3' -55.8 NC_002512.2 + 39345 0.66 0.960293
Target:  5'- gGUGCcCaGCAGCCggucccucGCCCCGaccagcUCGUCGa -3'
miRNA:   3'- gCACGaGcCGUUGG--------UGGGGU------AGUAGC- -5'
9010 3' -55.8 NC_002512.2 + 52202 0.67 0.935656
Target:  5'- -uUGUcCGGCGAUCACCCUucaAUCAaUCGg -3'
miRNA:   3'- gcACGaGCCGUUGGUGGGG---UAGU-AGC- -5'
9010 3' -55.8 NC_002512.2 + 57478 0.66 0.96365
Target:  5'- aCGUGCUCcagccgGGCggUCAUCCCggCGUg- -3'
miRNA:   3'- -GCACGAG------CCGuuGGUGGGGuaGUAgc -5'
9010 3' -55.8 NC_002512.2 + 62058 0.66 0.966803
Target:  5'- aCGUGCgCGGgguccuCGGCCACCUCGUaGUUGg -3'
miRNA:   3'- -GCACGaGCC------GUUGGUGGGGUAgUAGC- -5'
9010 3' -55.8 NC_002512.2 + 63483 0.67 0.948957
Target:  5'- --gGCUCGGCAggACCAUCCCccgggCGg -3'
miRNA:   3'- gcaCGAGCCGU--UGGUGGGGuaguaGC- -5'
9010 3' -55.8 NC_002512.2 + 65074 0.68 0.896776
Target:  5'- cCG-GCUCGGCucuCCAgUCCCGUCG-CGa -3'
miRNA:   3'- -GCaCGAGCCGuu-GGU-GGGGUAGUaGC- -5'
9010 3' -55.8 NC_002512.2 + 67850 0.66 0.956728
Target:  5'- aCGcGCauagaaUCGGC-ACCACCUCGcCGUCGg -3'
miRNA:   3'- -GCaCG------AGCCGuUGGUGGGGUaGUAGC- -5'
9010 3' -55.8 NC_002512.2 + 68594 0.67 0.940313
Target:  5'- gGUGCUCGucguaggccaGCGACuCGCCCaCGUCAg-- -3'
miRNA:   3'- gCACGAGC----------CGUUG-GUGGG-GUAGUagc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.