miRNA display CGI


Results 1 - 20 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9010 3' -55.8 NC_002512.2 + 90930 0.68 0.890336
Target:  5'- aCGggGC-CGGCGcgGCCGCCgCCGUCGUgGu -3'
miRNA:   3'- -GCa-CGaGCCGU--UGGUGG-GGUAGUAgC- -5'
9010 3' -55.8 NC_002512.2 + 38537 0.71 0.788979
Target:  5'- gGUcGCgCGGCGACCuacCCCCGUCG-CGg -3'
miRNA:   3'- gCA-CGaGCCGUUGGu--GGGGUAGUaGC- -5'
9010 3' -55.8 NC_002512.2 + 134242 0.71 0.788979
Target:  5'- uGUGCcgggggCGGCcgAGCCGCCCCcuggccuUCGUCGu -3'
miRNA:   3'- gCACGa-----GCCG--UUGGUGGGGu------AGUAGC- -5'
9010 3' -55.8 NC_002512.2 + 129388 0.7 0.839511
Target:  5'- gGUGCUCGacgaccGCGGCCuCCCCAagGUCc -3'
miRNA:   3'- gCACGAGC------CGUUGGuGGGGUagUAGc -5'
9010 3' -55.8 NC_002512.2 + 154757 0.69 0.869748
Target:  5'- gGUGg-CGGUGACCACCaCCAgcagCAUCa -3'
miRNA:   3'- gCACgaGCCGUUGGUGG-GGUa---GUAGc -5'
9010 3' -55.8 NC_002512.2 + 23025 0.69 0.869748
Target:  5'- --aGCUCGGC-GCCGCCCCcgaagaagAUCGUg- -3'
miRNA:   3'- gcaCGAGCCGuUGGUGGGG--------UAGUAgc -5'
9010 3' -55.8 NC_002512.2 + 98727 0.69 0.869748
Target:  5'- aCGgGCUCGGCcgcuuccucucGGCCgcccuGCCCCGcCAUCGg -3'
miRNA:   3'- -GCaCGAGCCG-----------UUGG-----UGGGGUaGUAGC- -5'
9010 3' -55.8 NC_002512.2 + 192597 0.69 0.869748
Target:  5'- aCGUGUUCGGCccgaAACCggaACCCUGUgCGUUGg -3'
miRNA:   3'- -GCACGAGCCG----UUGG---UGGGGUA-GUAGC- -5'
9010 3' -55.8 NC_002512.2 + 18693 0.68 0.890336
Target:  5'- uCGUGggCGGCGGgCACCCCGagCAgggCGg -3'
miRNA:   3'- -GCACgaGCCGUUgGUGGGGUa-GUa--GC- -5'
9010 3' -55.8 NC_002512.2 + 82245 0.71 0.788979
Target:  5'- gGUaGCggGaGCGGCCGCCgCCGUCGUCGu -3'
miRNA:   3'- gCA-CGagC-CGUUGGUGG-GGUAGUAGC- -5'
9010 3' -55.8 NC_002512.2 + 21513 0.71 0.788979
Target:  5'- --aGCgUCGG--GCCACCUCGUCGUCGa -3'
miRNA:   3'- gcaCG-AGCCguUGGUGGGGUAGUAGC- -5'
9010 3' -55.8 NC_002512.2 + 87207 0.72 0.756254
Target:  5'- aGUGCUCGGUGACgGCCCuCGUgcccguguauuuccaCAUCa -3'
miRNA:   3'- gCACGAGCCGUUGgUGGG-GUA---------------GUAGc -5'
9010 3' -55.8 NC_002512.2 + 83162 0.74 0.625788
Target:  5'- cCGgcgGCcgCGGCcGCCGCCCCGcCGUCGu -3'
miRNA:   3'- -GCa--CGa-GCCGuUGGUGGGGUaGUAGC- -5'
9010 3' -55.8 NC_002512.2 + 69528 0.73 0.67537
Target:  5'- cCGUGCgaGGCAuugaGCUGCCUCAUCGUCa -3'
miRNA:   3'- -GCACGagCCGU----UGGUGGGGUAGUAGc -5'
9010 3' -55.8 NC_002512.2 + 137262 0.73 0.67537
Target:  5'- --cGC-CGGCGGCCGCCguccguCCGUCGUCGc -3'
miRNA:   3'- gcaCGaGCCGUUGGUGG------GGUAGUAGC- -5'
9010 3' -55.8 NC_002512.2 + 81369 0.73 0.695024
Target:  5'- cCGggGCgggCGGCGGCCGCCUCcUCGUCc -3'
miRNA:   3'- -GCa-CGa--GCCGUUGGUGGGGuAGUAGc -5'
9010 3' -55.8 NC_002512.2 + 123505 0.72 0.704781
Target:  5'- gGUGCUCGGCccccgguCCuuCCUCGUCGUCu -3'
miRNA:   3'- gCACGAGCCGuu-----GGu-GGGGUAGUAGc -5'
9010 3' -55.8 NC_002512.2 + 79819 0.72 0.714479
Target:  5'- aCGgcgGCggCGGCGGuccccccucCCGCCCCGUCGUCc -3'
miRNA:   3'- -GCa--CGa-GCCGUU---------GGUGGGGUAGUAGc -5'
9010 3' -55.8 NC_002512.2 + 82923 0.72 0.724112
Target:  5'- aGU-CUCGGCcGCgGCCgCCGUCGUCGc -3'
miRNA:   3'- gCAcGAGCCGuUGgUGG-GGUAGUAGC- -5'
9010 3' -55.8 NC_002512.2 + 19367 0.72 0.743145
Target:  5'- uCGgggGCUCGGCGGCCucGCgCUcgCGUCGg -3'
miRNA:   3'- -GCa--CGAGCCGUUGG--UGgGGuaGUAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.