miRNA display CGI


Results 1 - 20 of 107 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9010 3' -55.8 NC_002512.2 + 173727 1.08 0.005482
Target:  5'- cCGUGCUCGGCAACCACCCCAUCAUCGc -3'
miRNA:   3'- -GCACGAGCCGUUGGUGGGGUAGUAGC- -5'
9010 3' -55.8 NC_002512.2 + 155413 0.77 0.471655
Target:  5'- uGUcGCUCuGCGACCgggaguGCCCCGUCGUCGu -3'
miRNA:   3'- gCA-CGAGcCGUUGG------UGGGGUAGUAGC- -5'
9010 3' -55.8 NC_002512.2 + 98158 0.77 0.480805
Target:  5'- cCG-GUUCGGCGGucCCGCgCCCGUCAUCGu -3'
miRNA:   3'- -GCaCGAGCCGUU--GGUG-GGGUAGUAGC- -5'
9010 3' -55.8 NC_002512.2 + 189611 0.75 0.57631
Target:  5'- uCGUGCgCGGCGGCCGCaCgCgAUCGUCGc -3'
miRNA:   3'- -GCACGaGCCGUUGGUG-G-GgUAGUAGC- -5'
9010 3' -55.8 NC_002512.2 + 83162 0.74 0.625788
Target:  5'- cCGgcgGCcgCGGCcGCCGCCCCGcCGUCGu -3'
miRNA:   3'- -GCa--CGa-GCCGuUGGUGGGGUaGUAGC- -5'
9010 3' -55.8 NC_002512.2 + 72439 0.73 0.665489
Target:  5'- aGUGCauaaCGGCAAUCAUaUCCAUCAUCGu -3'
miRNA:   3'- gCACGa---GCCGUUGGUG-GGGUAGUAGC- -5'
9010 3' -55.8 NC_002512.2 + 137262 0.73 0.67537
Target:  5'- --cGC-CGGCGGCCGCCguccguCCGUCGUCGc -3'
miRNA:   3'- gcaCGaGCCGUUGGUGG------GGUAGUAGC- -5'
9010 3' -55.8 NC_002512.2 + 69528 0.73 0.67537
Target:  5'- cCGUGCgaGGCAuugaGCUGCCUCAUCGUCa -3'
miRNA:   3'- -GCACGagCCGU----UGGUGGGGUAGUAGc -5'
9010 3' -55.8 NC_002512.2 + 201703 0.73 0.685218
Target:  5'- gGUGCgggaUCGGCGGCgGCgUCGUCGUCGc -3'
miRNA:   3'- gCACG----AGCCGUUGgUGgGGUAGUAGC- -5'
9010 3' -55.8 NC_002512.2 + 101713 0.73 0.685218
Target:  5'- --cGCUCGGCGACCucguCCCCGggcUCGUUc -3'
miRNA:   3'- gcaCGAGCCGUUGGu---GGGGU---AGUAGc -5'
9010 3' -55.8 NC_002512.2 + 81369 0.73 0.695024
Target:  5'- cCGggGCgggCGGCGGCCGCCUCcUCGUCc -3'
miRNA:   3'- -GCa-CGa--GCCGUUGGUGGGGuAGUAGc -5'
9010 3' -55.8 NC_002512.2 + 126443 0.72 0.703808
Target:  5'- cCGgccgGCgacggCGGCGGCCGCCuuguucgCCGUCGUCGu -3'
miRNA:   3'- -GCa---CGa----GCCGUUGGUGG-------GGUAGUAGC- -5'
9010 3' -55.8 NC_002512.2 + 123505 0.72 0.704781
Target:  5'- gGUGCUCGGCccccgguCCuuCCUCGUCGUCu -3'
miRNA:   3'- gCACGAGCCGuu-----GGu-GGGGUAGUAGc -5'
9010 3' -55.8 NC_002512.2 + 129823 0.72 0.714479
Target:  5'- uCGUcgUCGGCGccGCCGCCCCcgCGUCu -3'
miRNA:   3'- -GCAcgAGCCGU--UGGUGGGGuaGUAGc -5'
9010 3' -55.8 NC_002512.2 + 79819 0.72 0.714479
Target:  5'- aCGgcgGCggCGGCGGuccccccucCCGCCCCGUCGUCc -3'
miRNA:   3'- -GCa--CGa-GCCGUU---------GGUGGGGUAGUAGc -5'
9010 3' -55.8 NC_002512.2 + 82923 0.72 0.724112
Target:  5'- aGU-CUCGGCcGCgGCCgCCGUCGUCGc -3'
miRNA:   3'- gCAcGAGCCGuUGgUGG-GGUAGUAGC- -5'
9010 3' -55.8 NC_002512.2 + 19367 0.72 0.743145
Target:  5'- uCGgggGCUCGGCGGCCucGCgCUcgCGUCGg -3'
miRNA:   3'- -GCa--CGAGCCGUUGG--UGgGGuaGUAGC- -5'
9010 3' -55.8 NC_002512.2 + 105101 0.72 0.752529
Target:  5'- aCGUGuCUccccggguccCGGCAGCCcucGCaCCCGUCGUCGc -3'
miRNA:   3'- -GCAC-GA----------GCCGUUGG---UG-GGGUAGUAGC- -5'
9010 3' -55.8 NC_002512.2 + 87207 0.72 0.756254
Target:  5'- aGUGCUCGGUGACgGCCCuCGUgcccguguauuuccaCAUCa -3'
miRNA:   3'- gCACGAGCCGUUGgUGGG-GUA---------------GUAGc -5'
9010 3' -55.8 NC_002512.2 + 146316 0.71 0.770987
Target:  5'- gCGUGUaCGGCcacGGCCGCUCCGUCcgCa -3'
miRNA:   3'- -GCACGaGCCG---UUGGUGGGGUAGuaGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.