Results 1 - 20 of 107 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9010 | 3' | -55.8 | NC_002512.2 | + | 220008 | 0.66 | 0.966803 |
Target: 5'- --cGCcCGGCGggucgagagGCCGCUCCGUC-UCGg -3' miRNA: 3'- gcaCGaGCCGU---------UGGUGGGGUAGuAGC- -5' |
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9010 | 3' | -55.8 | NC_002512.2 | + | 160057 | 0.66 | 0.95295 |
Target: 5'- -uUGCUCuGCGACCACgUCAcCGUCa -3' miRNA: 3'- gcACGAGcCGUUGGUGgGGUaGUAGc -5' |
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9010 | 3' | -55.8 | NC_002512.2 | + | 224718 | 0.67 | 0.948957 |
Target: 5'- --gGC-CGGCcGCCGCCCCG--GUCGc -3' miRNA: 3'- gcaCGaGCCGuUGGUGGGGUagUAGC- -5' |
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9010 | 3' | -55.8 | NC_002512.2 | + | 173727 | 1.08 | 0.005482 |
Target: 5'- cCGUGCUCGGCAACCACCCCAUCAUCGc -3' miRNA: 3'- -GCACGAGCCGUUGGUGGGGUAGUAGC- -5' |
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9010 | 3' | -55.8 | NC_002512.2 | + | 217583 | 0.66 | 0.96365 |
Target: 5'- cCG-GUcCGGCGgcGCCGCCUCggggGUCGUCGg -3' miRNA: 3'- -GCaCGaGCCGU--UGGUGGGG----UAGUAGC- -5' |
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9010 | 3' | -55.8 | NC_002512.2 | + | 143513 | 0.66 | 0.96365 |
Target: 5'- cCGUGCUCuccagGGCGcgccugGCgGCCUCGUCgccGUCGg -3' miRNA: 3'- -GCACGAG-----CCGU------UGgUGGGGUAG---UAGC- -5' |
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9010 | 3' | -55.8 | NC_002512.2 | + | 183576 | 0.66 | 0.96365 |
Target: 5'- --cGCUCGGguGCaccaACUCCAUCA-CGc -3' miRNA: 3'- gcaCGAGCCguUGg---UGGGGUAGUaGC- -5' |
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9010 | 3' | -55.8 | NC_002512.2 | + | 140727 | 0.66 | 0.96365 |
Target: 5'- uCGU-CUCGGCcuCCAUCCCGgagaCGUUGa -3' miRNA: 3'- -GCAcGAGCCGuuGGUGGGGUa---GUAGC- -5' |
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9010 | 3' | -55.8 | NC_002512.2 | + | 124197 | 0.66 | 0.960293 |
Target: 5'- --cGUUCGGCAcgcacAUCACCaCCGUCGUg- -3' miRNA: 3'- gcaCGAGCCGU-----UGGUGG-GGUAGUAgc -5' |
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9010 | 3' | -55.8 | NC_002512.2 | + | 74511 | 0.66 | 0.95295 |
Target: 5'- --cGC-CGGCGccGCCGCCCCGaCcUCGa -3' miRNA: 3'- gcaCGaGCCGU--UGGUGGGGUaGuAGC- -5' |
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9010 | 3' | -55.8 | NC_002512.2 | + | 206305 | 0.66 | 0.956728 |
Target: 5'- uCGUGUUCGcucucgcccaGCGGCCACgCCAgguggcaCGUCGg -3' miRNA: 3'- -GCACGAGC----------CGUUGGUGgGGUa------GUAGC- -5' |
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9010 | 3' | -55.8 | NC_002512.2 | + | 74587 | 0.66 | 0.96365 |
Target: 5'- gGUGCUCgaGGCcggGGCC-CUCCGUCGgcUCGa -3' miRNA: 3'- gCACGAG--CCG---UUGGuGGGGUAGU--AGC- -5' |
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9010 | 3' | -55.8 | NC_002512.2 | + | 186409 | 0.66 | 0.966803 |
Target: 5'- gCGUcCUCGGCuuCCACgCCGUgcUCGg -3' miRNA: 3'- -GCAcGAGCCGuuGGUGgGGUAguAGC- -5' |
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9010 | 3' | -55.8 | NC_002512.2 | + | 167565 | 0.66 | 0.956728 |
Target: 5'- gGUGCccgUCGGCuuCUuCCCgGUCAUCc -3' miRNA: 3'- gCACG---AGCCGuuGGuGGGgUAGUAGc -5' |
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9010 | 3' | -55.8 | NC_002512.2 | + | 167429 | 0.66 | 0.966803 |
Target: 5'- uCGUGCggCGGCAcGCCugCgCGuUCGUCc -3' miRNA: 3'- -GCACGa-GCCGU-UGGugGgGU-AGUAGc -5' |
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9010 | 3' | -55.8 | NC_002512.2 | + | 221124 | 0.66 | 0.96365 |
Target: 5'- --aGCUuccgaCGGCGcugaggACCGcguCCCCGUCGUCGa -3' miRNA: 3'- gcaCGA-----GCCGU------UGGU---GGGGUAGUAGC- -5' |
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9010 | 3' | -55.8 | NC_002512.2 | + | 197811 | 0.66 | 0.955989 |
Target: 5'- --cGCcaUCGGCGACCcCCCCugccggaggugCAUCGa -3' miRNA: 3'- gcaCG--AGCCGUUGGuGGGGua---------GUAGC- -5' |
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9010 | 3' | -55.8 | NC_002512.2 | + | 207037 | 0.66 | 0.951775 |
Target: 5'- gCGUGCcgucCGGCAgguggaacgggcucGCCAUCaCgGUCGUCGa -3' miRNA: 3'- -GCACGa---GCCGU--------------UGGUGG-GgUAGUAGC- -5' |
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9010 | 3' | -55.8 | NC_002512.2 | + | 196706 | 0.66 | 0.964935 |
Target: 5'- -cUGUUCGGUuccgugaucgagaagAACCGCUUCGUCGUCc -3' miRNA: 3'- gcACGAGCCG---------------UUGGUGGGGUAGUAGc -5' |
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9010 | 3' | -55.8 | NC_002512.2 | + | 195725 | 0.66 | 0.96365 |
Target: 5'- aCGUGgaaggggagCGGgAACCGCUCCGaggUCGUCGg -3' miRNA: 3'- -GCACga-------GCCgUUGGUGGGGU---AGUAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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