miRNA display CGI


Results 1 - 20 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9010 3' -55.8 NC_002512.2 + 224718 0.67 0.948957
Target:  5'- --gGC-CGGCcGCCGCCCCG--GUCGc -3'
miRNA:   3'- gcaCGaGCCGuUGGUGGGGUagUAGC- -5'
9010 3' -55.8 NC_002512.2 + 223573 0.67 0.944746
Target:  5'- --cGCgggCGGCGGCCACCUCGaCGUg- -3'
miRNA:   3'- gcaCGa--GCCGUUGGUGGGGUaGUAgc -5'
9010 3' -55.8 NC_002512.2 + 221124 0.66 0.96365
Target:  5'- --aGCUuccgaCGGCGcugaggACCGcguCCCCGUCGUCGa -3'
miRNA:   3'- gcaCGA-----GCCGU------UGGU---GGGGUAGUAGC- -5'
9010 3' -55.8 NC_002512.2 + 220008 0.66 0.966803
Target:  5'- --cGCcCGGCGggucgagagGCCGCUCCGUC-UCGg -3'
miRNA:   3'- gcaCGaGCCGU---------UGGUGGGGUAGuAGC- -5'
9010 3' -55.8 NC_002512.2 + 219244 0.67 0.944746
Target:  5'- uCGUGCUCGGCcGCCucugGCUgC-UCGUCc -3'
miRNA:   3'- -GCACGAGCCGuUGG----UGGgGuAGUAGc -5'
9010 3' -55.8 NC_002512.2 + 217795 0.68 0.909001
Target:  5'- cCGgcugGCggaUCGGCGucGCCGuCCCgAUCGUCGa -3'
miRNA:   3'- -GCa---CG---AGCCGU--UGGU-GGGgUAGUAGC- -5'
9010 3' -55.8 NC_002512.2 + 217583 0.66 0.96365
Target:  5'- cCG-GUcCGGCGgcGCCGCCUCggggGUCGUCGg -3'
miRNA:   3'- -GCaCGaGCCGU--UGGUGGGG----UAGUAGC- -5'
9010 3' -55.8 NC_002512.2 + 209787 0.69 0.862477
Target:  5'- --aGCcCGGCGGCUACUUCAUgGUCGg -3'
miRNA:   3'- gcaCGaGCCGUUGGUGGGGUAgUAGC- -5'
9010 3' -55.8 NC_002512.2 + 207686 0.67 0.935656
Target:  5'- --cGC-CGGCcgAAgCGCUCCGUCAUCGu -3'
miRNA:   3'- gcaCGaGCCG--UUgGUGGGGUAGUAGC- -5'
9010 3' -55.8 NC_002512.2 + 207037 0.66 0.951775
Target:  5'- gCGUGCcgucCGGCAgguggaacgggcucGCCAUCaCgGUCGUCGa -3'
miRNA:   3'- -GCACGa---GCCGU--------------UGGUGG-GgUAGUAGC- -5'
9010 3' -55.8 NC_002512.2 + 206305 0.66 0.956728
Target:  5'- uCGUGUUCGcucucgcccaGCGGCCACgCCAgguggcaCGUCGg -3'
miRNA:   3'- -GCACGAGC----------CGUUGGUGgGGUa------GUAGC- -5'
9010 3' -55.8 NC_002512.2 + 201703 0.73 0.685218
Target:  5'- gGUGCgggaUCGGCGGCgGCgUCGUCGUCGc -3'
miRNA:   3'- gCACG----AGCCGUUGgUGgGGUAGUAGC- -5'
9010 3' -55.8 NC_002512.2 + 197811 0.66 0.955989
Target:  5'- --cGCcaUCGGCGACCcCCCCugccggaggugCAUCGa -3'
miRNA:   3'- gcaCG--AGCCGUUGGuGGGGua---------GUAGC- -5'
9010 3' -55.8 NC_002512.2 + 196706 0.66 0.964935
Target:  5'- -cUGUUCGGUuccgugaucgagaagAACCGCUUCGUCGUCc -3'
miRNA:   3'- gcACGAGCCG---------------UUGGUGGGGUAGUAGc -5'
9010 3' -55.8 NC_002512.2 + 195725 0.66 0.96365
Target:  5'- aCGUGgaaggggagCGGgAACCGCUCCGaggUCGUCGg -3'
miRNA:   3'- -GCACga-------GCCgUUGGUGGGGU---AGUAGC- -5'
9010 3' -55.8 NC_002512.2 + 193084 0.69 0.869748
Target:  5'- uGUGCUgCGGCGaguGCCGCUUCAUCuccgCGc -3'
miRNA:   3'- gCACGA-GCCGU---UGGUGGGGUAGua--GC- -5'
9010 3' -55.8 NC_002512.2 + 192597 0.69 0.869748
Target:  5'- aCGUGUUCGGCccgaAACCggaACCCUGUgCGUUGg -3'
miRNA:   3'- -GCACGAGCCG----UUGG---UGGGGUA-GUAGC- -5'
9010 3' -55.8 NC_002512.2 + 192275 0.67 0.944746
Target:  5'- gCGUGCUCGGgAcgcuCUGCgUCGUCAUCc -3'
miRNA:   3'- -GCACGAGCCgUu---GGUGgGGUAGUAGc -5'
9010 3' -55.8 NC_002512.2 + 189611 0.75 0.57631
Target:  5'- uCGUGCgCGGCGGCCGCaCgCgAUCGUCGc -3'
miRNA:   3'- -GCACGaGCCGUUGGUG-G-GgUAGUAGC- -5'
9010 3' -55.8 NC_002512.2 + 186409 0.66 0.966803
Target:  5'- gCGUcCUCGGCuuCCACgCCGUgcUCGg -3'
miRNA:   3'- -GCAcGAGCCGuuGGUGgGGUAguAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.