miRNA display CGI


Results 21 - 40 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9010 3' -55.8 NC_002512.2 + 79629 0.66 0.956728
Target:  5'- gGUaCUCGGCGuCguCCCCcUCGUCGu -3'
miRNA:   3'- gCAcGAGCCGUuGguGGGGuAGUAGC- -5'
9010 3' -55.8 NC_002512.2 + 67850 0.66 0.956728
Target:  5'- aCGcGCauagaaUCGGC-ACCACCUCGcCGUCGg -3'
miRNA:   3'- -GCaCG------AGCCGuUGGUGGGGUaGUAGC- -5'
9010 3' -55.8 NC_002512.2 + 84785 0.66 0.956728
Target:  5'- cCGUGUcggcCGGCAGCCgcgacGCCUCGcggaacUCGUCGa -3'
miRNA:   3'- -GCACGa---GCCGUUGG-----UGGGGU------AGUAGC- -5'
9010 3' -55.8 NC_002512.2 + 197811 0.66 0.955989
Target:  5'- --cGCcaUCGGCGACCcCCCCugccggaggugCAUCGa -3'
miRNA:   3'- gcaCG--AGCCGUUGGuGGGGua---------GUAGC- -5'
9010 3' -55.8 NC_002512.2 + 11929 0.66 0.954487
Target:  5'- --cGCUCGGCAAauaggcagucguuccCCGCCCCG--GUCc -3'
miRNA:   3'- gcaCGAGCCGUU---------------GGUGGGGUagUAGc -5'
9010 3' -55.8 NC_002512.2 + 74511 0.66 0.95295
Target:  5'- --cGC-CGGCGccGCCGCCCCGaCcUCGa -3'
miRNA:   3'- gcaCGaGCCGU--UGGUGGGGUaGuAGC- -5'
9010 3' -55.8 NC_002512.2 + 37234 0.66 0.95295
Target:  5'- --aGUggGGCAGCCGCCCCcgCGa-- -3'
miRNA:   3'- gcaCGagCCGUUGGUGGGGuaGUagc -5'
9010 3' -55.8 NC_002512.2 + 160057 0.66 0.95295
Target:  5'- -uUGCUCuGCGACCACgUCAcCGUCa -3'
miRNA:   3'- gcACGAGcCGUUGGUGgGGUaGUAGc -5'
9010 3' -55.8 NC_002512.2 + 207037 0.66 0.951775
Target:  5'- gCGUGCcgucCGGCAgguggaacgggcucGCCAUCaCgGUCGUCGa -3'
miRNA:   3'- -GCACGa---GCCGU--------------UGGUGG-GgUAGUAGC- -5'
9010 3' -55.8 NC_002512.2 + 179484 0.67 0.948957
Target:  5'- -cUGCuUCGGCGGCgucguCGCCaUCGUCGUCGg -3'
miRNA:   3'- gcACG-AGCCGUUG-----GUGG-GGUAGUAGC- -5'
9010 3' -55.8 NC_002512.2 + 97607 0.67 0.948957
Target:  5'- cCGUGUucUCGGUGugCGCCgCCAuguacccgaUCAUCa -3'
miRNA:   3'- -GCACG--AGCCGUugGUGG-GGU---------AGUAGc -5'
9010 3' -55.8 NC_002512.2 + 183423 0.67 0.948957
Target:  5'- gCGUGCUCGuCAGCCucuuCUUCGUC-UCGa -3'
miRNA:   3'- -GCACGAGCcGUUGGu---GGGGUAGuAGC- -5'
9010 3' -55.8 NC_002512.2 + 224718 0.67 0.948957
Target:  5'- --gGC-CGGCcGCCGCCCCG--GUCGc -3'
miRNA:   3'- gcaCGaGCCGuUGGUGGGGUagUAGC- -5'
9010 3' -55.8 NC_002512.2 + 110542 0.67 0.948957
Target:  5'- cCGUGaC-CGGCGuuuCCGCCCCcgCG-CGg -3'
miRNA:   3'- -GCAC-GaGCCGUu--GGUGGGGuaGUaGC- -5'
9010 3' -55.8 NC_002512.2 + 63483 0.67 0.948957
Target:  5'- --gGCUCGGCAggACCAUCCCccgggCGg -3'
miRNA:   3'- gcaCGAGCCGU--UGGUGGGGuaguaGC- -5'
9010 3' -55.8 NC_002512.2 + 118231 0.67 0.944746
Target:  5'- uCGUGCUCGGgGACgGCaCCGUCcUgGa -3'
miRNA:   3'- -GCACGAGCCgUUGgUGgGGUAGuAgC- -5'
9010 3' -55.8 NC_002512.2 + 192275 0.67 0.944746
Target:  5'- gCGUGCUCGGgAcgcuCUGCgUCGUCAUCc -3'
miRNA:   3'- -GCACGAGCCgUu---GGUGgGGUAGUAGc -5'
9010 3' -55.8 NC_002512.2 + 111808 0.67 0.944746
Target:  5'- --cGC-CGGCGccggaGCCGCCCCcUCcgCGg -3'
miRNA:   3'- gcaCGaGCCGU-----UGGUGGGGuAGuaGC- -5'
9010 3' -55.8 NC_002512.2 + 219244 0.67 0.944746
Target:  5'- uCGUGCUCGGCcGCCucugGCUgC-UCGUCc -3'
miRNA:   3'- -GCACGAGCCGuUGG----UGGgGuAGUAGc -5'
9010 3' -55.8 NC_002512.2 + 223573 0.67 0.944746
Target:  5'- --cGCgggCGGCGGCCACCUCGaCGUg- -3'
miRNA:   3'- gcaCGa--GCCGUUGGUGGGGUaGUAgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.