miRNA display CGI


Results 41 - 60 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9010 3' -55.8 NC_002512.2 + 96085 0.67 0.943439
Target:  5'- --cGCaccCGGCGcgaccgucguccccGCCGCCgCCGUCGUCGu -3'
miRNA:   3'- gcaCGa--GCCGU--------------UGGUGG-GGUAGUAGC- -5'
9010 3' -55.8 NC_002512.2 + 172831 0.67 0.940313
Target:  5'- cCGUucGCcCGGCGcCC-CCCgGUCGUCGg -3'
miRNA:   3'- -GCA--CGaGCCGUuGGuGGGgUAGUAGC- -5'
9010 3' -55.8 NC_002512.2 + 68594 0.67 0.940313
Target:  5'- gGUGCUCGucguaggccaGCGACuCGCCCaCGUCAg-- -3'
miRNA:   3'- gCACGAGC----------CGUUG-GUGGG-GUAGUagc -5'
9010 3' -55.8 NC_002512.2 + 118818 0.67 0.940313
Target:  5'- uCGUGgUCGGCGACCGCgaggUCC-UCAgcgCGu -3'
miRNA:   3'- -GCACgAGCCGUUGGUG----GGGuAGUa--GC- -5'
9010 3' -55.8 NC_002512.2 + 22133 0.67 0.935656
Target:  5'- aCG-GCggCGGCu-CCACCCCGgagCGUCc -3'
miRNA:   3'- -GCaCGa-GCCGuuGGUGGGGUa--GUAGc -5'
9010 3' -55.8 NC_002512.2 + 207686 0.67 0.935656
Target:  5'- --cGC-CGGCcgAAgCGCUCCGUCAUCGu -3'
miRNA:   3'- gcaCGaGCCG--UUgGUGGGGUAGUAGC- -5'
9010 3' -55.8 NC_002512.2 + 178837 0.67 0.935656
Target:  5'- aCGUGCUCGGgucgcaggcacaCGugCGCguggUCCGUCGUCa -3'
miRNA:   3'- -GCACGAGCC------------GUugGUG----GGGUAGUAGc -5'
9010 3' -55.8 NC_002512.2 + 157310 0.67 0.935656
Target:  5'- gCGUGaUCGGUAACCugaACCgCGUgAUCGa -3'
miRNA:   3'- -GCACgAGCCGUUGG---UGGgGUAgUAGC- -5'
9010 3' -55.8 NC_002512.2 + 52202 0.67 0.935656
Target:  5'- -uUGUcCGGCGAUCACCCUucaAUCAaUCGg -3'
miRNA:   3'- gcACGaGCCGUUGGUGGGG---UAGU-AGC- -5'
9010 3' -55.8 NC_002512.2 + 29613 0.67 0.930775
Target:  5'- aCG-GCUCGuCGuCCucguCCCCGUCGUCGu -3'
miRNA:   3'- -GCaCGAGCcGUuGGu---GGGGUAGUAGC- -5'
9010 3' -55.8 NC_002512.2 + 156170 0.67 0.930775
Target:  5'- uCGcUGCUCGagcGCGACCAgCUCAUgGUCa -3'
miRNA:   3'- -GC-ACGAGC---CGUUGGUgGGGUAgUAGc -5'
9010 3' -55.8 NC_002512.2 + 118655 0.67 0.925669
Target:  5'- --cGCUCcgGGCGcccgGCCG-CCCGUCAUCGu -3'
miRNA:   3'- gcaCGAG--CCGU----UGGUgGGGUAGUAGC- -5'
9010 3' -55.8 NC_002512.2 + 140075 0.68 0.919792
Target:  5'- aCGUccuCUCGGCGcucaucgGCgACCCCGUCcuGUCGg -3'
miRNA:   3'- -GCAc--GAGCCGU-------UGgUGGGGUAG--UAGC- -5'
9010 3' -55.8 NC_002512.2 + 117738 0.68 0.914781
Target:  5'- cCG-GCUCGccguCGACCGCCUCGUCuUCGc -3'
miRNA:   3'- -GCaCGAGCc---GUUGGUGGGGUAGuAGC- -5'
9010 3' -55.8 NC_002512.2 + 103432 0.68 0.914781
Target:  5'- aCG-GCgaacaaGGCGGCCGCCgCCGUCGcCGg -3'
miRNA:   3'- -GCaCGag----CCGUUGGUGG-GGUAGUaGC- -5'
9010 3' -55.8 NC_002512.2 + 217795 0.68 0.909001
Target:  5'- cCGgcugGCggaUCGGCGucGCCGuCCCgAUCGUCGa -3'
miRNA:   3'- -GCa---CG---AGCCGU--UGGU-GGGgUAGUAGC- -5'
9010 3' -55.8 NC_002512.2 + 176600 0.68 0.907818
Target:  5'- uCGUcaGCUUGGCcgugucgaucuCCACCCCGUCGggggcUCGg -3'
miRNA:   3'- -GCA--CGAGCCGuu---------GGUGGGGUAGU-----AGC- -5'
9010 3' -55.8 NC_002512.2 + 28080 0.68 0.902999
Target:  5'- gCG-GCggagaCGGCGgagaggucGCCGCCCCGUCcgCGc -3'
miRNA:   3'- -GCaCGa----GCCGU--------UGGUGGGGUAGuaGC- -5'
9010 3' -55.8 NC_002512.2 + 65074 0.68 0.896776
Target:  5'- cCG-GCUCGGCucuCCAgUCCCGUCG-CGa -3'
miRNA:   3'- -GCaCGAGCCGuu-GGU-GGGGUAGUaGC- -5'
9010 3' -55.8 NC_002512.2 + 99096 0.68 0.896776
Target:  5'- gCGUGCugcgcgUCGGCGGCCcuCCUCGUgGUCc -3'
miRNA:   3'- -GCACG------AGCCGUUGGu-GGGGUAgUAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.