miRNA display CGI


Results 41 - 60 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9010 3' -55.8 NC_002512.2 + 99096 0.68 0.896776
Target:  5'- gCGUGCugcgcgUCGGCGGCCcuCCUCGUgGUCc -3'
miRNA:   3'- -GCACG------AGCCGUUGGu-GGGGUAgUAGc -5'
9010 3' -55.8 NC_002512.2 + 101713 0.73 0.685218
Target:  5'- --cGCUCGGCGACCucguCCCCGggcUCGUUc -3'
miRNA:   3'- gcaCGAGCCGUUGGu---GGGGU---AGUAGc -5'
9010 3' -55.8 NC_002512.2 + 103432 0.68 0.914781
Target:  5'- aCG-GCgaacaaGGCGGCCGCCgCCGUCGcCGg -3'
miRNA:   3'- -GCaCGag----CCGUUGGUGG-GGUAGUaGC- -5'
9010 3' -55.8 NC_002512.2 + 105101 0.72 0.752529
Target:  5'- aCGUGuCUccccggguccCGGCAGCCcucGCaCCCGUCGUCGc -3'
miRNA:   3'- -GCAC-GA----------GCCGUUGG---UG-GGGUAGUAGC- -5'
9010 3' -55.8 NC_002512.2 + 106733 0.69 0.862477
Target:  5'- uCGgcgGCgaucgCGGCGccGCCGCCCCGUCcccCGg -3'
miRNA:   3'- -GCa--CGa----GCCGU--UGGUGGGGUAGua-GC- -5'
9010 3' -55.8 NC_002512.2 + 107468 0.69 0.862477
Target:  5'- gCGUcCUCGGUggauuuguugAACCA-CCCGUCGUCGa -3'
miRNA:   3'- -GCAcGAGCCG----------UUGGUgGGGUAGUAGC- -5'
9010 3' -55.8 NC_002512.2 + 110542 0.67 0.948957
Target:  5'- cCGUGaC-CGGCGuuuCCGCCCCcgCG-CGg -3'
miRNA:   3'- -GCAC-GaGCCGUu--GGUGGGGuaGUaGC- -5'
9010 3' -55.8 NC_002512.2 + 110685 0.7 0.814949
Target:  5'- gGUGCUCGcGCAGCCGCCgCAg----- -3'
miRNA:   3'- gCACGAGC-CGUUGGUGGgGUaguagc -5'
9010 3' -55.8 NC_002512.2 + 111808 0.67 0.944746
Target:  5'- --cGC-CGGCGccggaGCCGCCCCcUCcgCGg -3'
miRNA:   3'- gcaCGaGCCGU-----UGGUGGGGuAGuaGC- -5'
9010 3' -55.8 NC_002512.2 + 117738 0.68 0.914781
Target:  5'- cCG-GCUCGccguCGACCGCCUCGUCuUCGc -3'
miRNA:   3'- -GCaCGAGCc---GUUGGUGGGGUAGuAGC- -5'
9010 3' -55.8 NC_002512.2 + 118231 0.67 0.944746
Target:  5'- uCGUGCUCGGgGACgGCaCCGUCcUgGa -3'
miRNA:   3'- -GCACGAGCCgUUGgUGgGGUAGuAgC- -5'
9010 3' -55.8 NC_002512.2 + 118655 0.67 0.925669
Target:  5'- --cGCUCcgGGCGcccgGCCG-CCCGUCAUCGu -3'
miRNA:   3'- gcaCGAG--CCGU----UGGUgGGGUAGUAGC- -5'
9010 3' -55.8 NC_002512.2 + 118818 0.67 0.940313
Target:  5'- uCGUGgUCGGCGACCGCgaggUCC-UCAgcgCGu -3'
miRNA:   3'- -GCACgAGCCGUUGGUG----GGGuAGUa--GC- -5'
9010 3' -55.8 NC_002512.2 + 123505 0.72 0.704781
Target:  5'- gGUGCUCGGCccccgguCCuuCCUCGUCGUCu -3'
miRNA:   3'- gCACGAGCCGuu-----GGu-GGGGUAGUAGc -5'
9010 3' -55.8 NC_002512.2 + 124197 0.66 0.960293
Target:  5'- --cGUUCGGCAcgcacAUCACCaCCGUCGUg- -3'
miRNA:   3'- gcaCGAGCCGU-----UGGUGG-GGUAGUAgc -5'
9010 3' -55.8 NC_002512.2 + 126443 0.72 0.703808
Target:  5'- cCGgccgGCgacggCGGCGGCCGCCuuguucgCCGUCGUCGu -3'
miRNA:   3'- -GCa---CGa----GCCGUUGGUGG-------GGUAGUAGC- -5'
9010 3' -55.8 NC_002512.2 + 128383 0.69 0.883682
Target:  5'- cCGUcGC-CGGCGGCgGaCCCCGUC-UCGa -3'
miRNA:   3'- -GCA-CGaGCCGUUGgU-GGGGUAGuAGC- -5'
9010 3' -55.8 NC_002512.2 + 129388 0.7 0.839511
Target:  5'- gGUGCUCGacgaccGCGGCCuCCCCAagGUCc -3'
miRNA:   3'- gCACGAGC------CGUUGGuGGGGUagUAGc -5'
9010 3' -55.8 NC_002512.2 + 129823 0.72 0.714479
Target:  5'- uCGUcgUCGGCGccGCCGCCCCcgCGUCu -3'
miRNA:   3'- -GCAcgAGCCGU--UGGUGGGGuaGUAGc -5'
9010 3' -55.8 NC_002512.2 + 134242 0.71 0.788979
Target:  5'- uGUGCcgggggCGGCcgAGCCGCCCCcuggccuUCGUCGu -3'
miRNA:   3'- gCACGa-----GCCG--UUGGUGGGGu------AGUAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.