miRNA display CGI


Results 41 - 60 of 424 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9015 3' -64 NC_002512.2 + 20787 0.75 0.227384
Target:  5'- gGGaCAcGgGGUGaCGACCCGGACGUCGg -3'
miRNA:   3'- gCC-GU-CgCCGCcGCUGGGCCUGCAGC- -5'
9015 3' -64 NC_002512.2 + 21079 0.68 0.59868
Target:  5'- gGGCGGCGGUcccgcuccggGGCGACCgccgucucagacgCGGACcUUGg -3'
miRNA:   3'- gCCGUCGCCG----------CCGCUGG-------------GCCUGcAGC- -5'
9015 3' -64 NC_002512.2 + 21164 0.67 0.618205
Target:  5'- uCGGCGGCgcucccgaucuGGuCGGCGAgcCCCGGGuaccCGUCc -3'
miRNA:   3'- -GCCGUCG-----------CC-GCCGCU--GGGCCU----GCAGc -5'
9015 3' -64 NC_002512.2 + 22133 0.69 0.53541
Target:  5'- aCGGCGGCGGCuccacCCCGGAgCGUCc -3'
miRNA:   3'- -GCCGUCGCCGccgcuGGGCCU-GCAGc -5'
9015 3' -64 NC_002512.2 + 22950 0.7 0.443506
Target:  5'- gGGCAcGCGGCGGUGugccagccguucaucACCCGcGGCGggacgCGg -3'
miRNA:   3'- gCCGU-CGCCGCCGC---------------UGGGC-CUGCa----GC- -5'
9015 3' -64 NC_002512.2 + 22996 0.67 0.636837
Target:  5'- gGGCGGCGcUGGUGACCUaccCGUCGg -3'
miRNA:   3'- gCCGUCGCcGCCGCUGGGccuGCAGC- -5'
9015 3' -64 NC_002512.2 + 23992 0.69 0.544457
Target:  5'- gGGUcccGCGaGCGGgGACCCGcGACG-CGa -3'
miRNA:   3'- gCCGu--CGC-CGCCgCUGGGC-CUGCaGC- -5'
9015 3' -64 NC_002512.2 + 24298 0.68 0.571874
Target:  5'- gGGaCAGCGGCggGGCGAacugcgguccCCCGG-CgGUCGg -3'
miRNA:   3'- gCC-GUCGCCG--CCGCU----------GGGCCuG-CAGC- -5'
9015 3' -64 NC_002512.2 + 24854 0.72 0.384117
Target:  5'- cCGGuCGGCGGCGgacGCGGCCCcgaccgaGGcGCGUCGu -3'
miRNA:   3'- -GCC-GUCGCCGC---CGCUGGG-------CC-UGCAGC- -5'
9015 3' -64 NC_002512.2 + 25218 0.66 0.692459
Target:  5'- gCGGgAGCGaGCcgccGGCGAuccCCCGcGCGUCGc -3'
miRNA:   3'- -GCCgUCGC-CG----CCGCU---GGGCcUGCAGC- -5'
9015 3' -64 NC_002512.2 + 25416 0.66 0.710736
Target:  5'- gGGCGuuacgGGCGuaGACCCGGGCGaacgCGg -3'
miRNA:   3'- gCCGUcg---CCGCcgCUGGGCCUGCa---GC- -5'
9015 3' -64 NC_002512.2 + 26683 0.75 0.253278
Target:  5'- gCGGCAGacguacgccgugcUGGCGGUGACCUGGcugGCGUCc -3'
miRNA:   3'- -GCCGUC-------------GCCGCCGCUGGGCC---UGCAGc -5'
9015 3' -64 NC_002512.2 + 26949 0.68 0.553553
Target:  5'- cCGGCGGCGGa-GCcaGACCCuGACGUUc -3'
miRNA:   3'- -GCCGUCGCCgcCG--CUGGGcCUGCAGc -5'
9015 3' -64 NC_002512.2 + 27593 0.67 0.654527
Target:  5'- aGcGCGGCGGCacGGCGcCCCGGucccacaGCG-CGg -3'
miRNA:   3'- gC-CGUCGCCG--CCGCuGGGCC-------UGCaGC- -5'
9015 3' -64 NC_002512.2 + 27755 0.67 0.617274
Target:  5'- gCGGCGGCGGCcgagaccGGCGccACCagcugacgaGGACG-CGg -3'
miRNA:   3'- -GCCGUCGCCG-------CCGC--UGGg--------CCUGCaGC- -5'
9015 3' -64 NC_002512.2 + 29105 0.69 0.544457
Target:  5'- --uCGGCGGCGGCGGCCauGGCGauggCGa -3'
miRNA:   3'- gccGUCGCCGCCGCUGGgcCUGCa---GC- -5'
9015 3' -64 NC_002512.2 + 29743 0.71 0.408024
Target:  5'- uGGCGGCGcGCgaGGgGGCCCGG-CGaUCGa -3'
miRNA:   3'- gCCGUCGC-CG--CCgCUGGGCCuGC-AGC- -5'
9015 3' -64 NC_002512.2 + 29958 0.71 0.423934
Target:  5'- cCGGUgAGCGGCGGcCGGCCgcgaaCGGACGa-- -3'
miRNA:   3'- -GCCG-UCGCCGCC-GCUGG-----GCCUGCagc -5'
9015 3' -64 NC_002512.2 + 30403 0.72 0.384874
Target:  5'- gCGGCccuGaCGGaCGGgGACgCGGGCGUCGu -3'
miRNA:   3'- -GCCGu--C-GCC-GCCgCUGgGCCUGCAGC- -5'
9015 3' -64 NC_002512.2 + 32074 0.75 0.248346
Target:  5'- cCGGCAGgGGgggucgccgaUGGCGGCCCGGGUGUCc -3'
miRNA:   3'- -GCCGUCgCC----------GCCGCUGGGCCUGCAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.