miRNA display CGI


Results 21 - 40 of 424 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9015 3' -64 NC_002512.2 + 7373 0.68 0.590336
Target:  5'- gCGGCcGCGGCgGGCGGCCa-GGCG-Ca -3'
miRNA:   3'- -GCCGuCGCCG-CCGCUGGgcCUGCaGc -5'
9015 3' -64 NC_002512.2 + 7699 0.67 0.608899
Target:  5'- aCGGaCGacGcCGGCcGCGGCCCGGgaguagGCGUCGg -3'
miRNA:   3'- -GCC-GU--C-GCCGcCGCUGGGCC------UGCAGC- -5'
9015 3' -64 NC_002512.2 + 9072 0.69 0.526417
Target:  5'- aCGGcCAGCGGCGG-GACCaCGaGCGggUCGa -3'
miRNA:   3'- -GCC-GUCGCCGCCgCUGG-GCcUGC--AGC- -5'
9015 3' -64 NC_002512.2 + 9230 0.66 0.683254
Target:  5'- gCGGCGGgccaGGUGGCG-CUCGcgccacaggacGACGUCGu -3'
miRNA:   3'- -GCCGUCg---CCGCCGCuGGGC-----------CUGCAGC- -5'
9015 3' -64 NC_002512.2 + 9525 0.81 0.103304
Target:  5'- aCGGCGGCGGCGGCcacGGCCaCGG-CGUUGa -3'
miRNA:   3'- -GCCGUCGCCGCCG---CUGG-GCCuGCAGC- -5'
9015 3' -64 NC_002512.2 + 10293 0.69 0.544457
Target:  5'- gGGCAGCGaGuCGGCcACCaGGACGUa- -3'
miRNA:   3'- gCCGUCGC-C-GCCGcUGGgCCUGCAgc -5'
9015 3' -64 NC_002512.2 + 11664 0.68 0.599608
Target:  5'- uCGGCGccGCGGCccgccGCGGCCCGaGGCGg-- -3'
miRNA:   3'- -GCCGU--CGCCGc----CGCUGGGC-CUGCagc -5'
9015 3' -64 NC_002512.2 + 12398 0.82 0.081158
Target:  5'- gGGCGGCGGCGGCGGCgCCGGGa-UCGc -3'
miRNA:   3'- gCCGUCGCCGCCGCUG-GGCCUgcAGC- -5'
9015 3' -64 NC_002512.2 + 13441 0.75 0.257728
Target:  5'- gGGCuucucgauggagagGGCGGCGGCGAgCCuGGCGUCc -3'
miRNA:   3'- gCCG--------------UCGCCGCCGCUgGGcCUGCAGc -5'
9015 3' -64 NC_002512.2 + 13626 0.66 0.674014
Target:  5'- uGGCGGUgcgGGCGGCGcACCUGauGACGa-- -3'
miRNA:   3'- gCCGUCG---CCGCCGC-UGGGC--CUGCagc -5'
9015 3' -64 NC_002512.2 + 13691 0.8 0.124999
Target:  5'- aCGGCcGCGGCGGUGAUCaCGGGCG-CGa -3'
miRNA:   3'- -GCCGuCGCCGCCGCUGG-GCCUGCaGC- -5'
9015 3' -64 NC_002512.2 + 14050 0.68 0.58109
Target:  5'- aGGCGGCGGCGcguucCGGCCgGGAggggaGUCc -3'
miRNA:   3'- gCCGUCGCCGCc----GCUGGgCCUg----CAGc -5'
9015 3' -64 NC_002512.2 + 14789 0.72 0.361883
Target:  5'- uCGGCcGCGGCGGCGAcgaaguccucgguCCCGccGACG-CGg -3'
miRNA:   3'- -GCCGuCGCCGCCGCU-------------GGGC--CUGCaGC- -5'
9015 3' -64 NC_002512.2 + 15645 0.71 0.415933
Target:  5'- uCGGCcGCgGGCGGCGAgCCGacgagccgccuGACGUCc -3'
miRNA:   3'- -GCCGuCG-CCGCCGCUgGGC-----------CUGCAGc -5'
9015 3' -64 NC_002512.2 + 15840 0.66 0.710736
Target:  5'- aGGUAGaCGGCGGUGA--CGGGCGa-- -3'
miRNA:   3'- gCCGUC-GCCGCCGCUggGCCUGCagc -5'
9015 3' -64 NC_002512.2 + 17879 0.78 0.159511
Target:  5'- gGGCccgggggacgugauaGGCGGCGGCGGCCCcgaGGACGaCGg -3'
miRNA:   3'- gCCG---------------UCGCCGCCGCUGGG---CCUGCaGC- -5'
9015 3' -64 NC_002512.2 + 17993 0.67 0.664746
Target:  5'- gCGGCAGCcccGGaaGGUGACCCgcuccaGGGCGcCGa -3'
miRNA:   3'- -GCCGUCG---CCg-CCGCUGGG------CCUGCaGC- -5'
9015 3' -64 NC_002512.2 + 18697 0.66 0.714367
Target:  5'- gGGCGGCgggcaccccgagcagGGCGGCGacgcGCUCGGGCa--- -3'
miRNA:   3'- gCCGUCG---------------CCGCCGC----UGGGCCUGcagc -5'
9015 3' -64 NC_002512.2 + 18849 0.72 0.377353
Target:  5'- aGGUAGCGGgGGaCGGCCgCGcaGugGUCGu -3'
miRNA:   3'- gCCGUCGCCgCC-GCUGG-GC--CugCAGC- -5'
9015 3' -64 NC_002512.2 + 20296 0.66 0.674014
Target:  5'- uGGaC-GUGGCGGUGACCgugcCGGACGagGa -3'
miRNA:   3'- gCC-GuCGCCGCCGCUGG----GCCUGCagC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.