Results 21 - 40 of 424 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9015 | 3' | -64 | NC_002512.2 | + | 133379 | 0.66 | 0.683254 |
Target: 5'- gCGGCucccucCGGCGGUcGCCCGGACcaUGg -3' miRNA: 3'- -GCCGuc----GCCGCCGcUGGGCCUGcaGC- -5' |
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9015 | 3' | -64 | NC_002512.2 | + | 130765 | 0.66 | 0.674014 |
Target: 5'- cCGGCcGUGcGCGaucucuuggaGCGGCCCGGGC-UCGc -3' miRNA: 3'- -GCCGuCGC-CGC----------CGCUGGGCCUGcAGC- -5' |
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9015 | 3' | -64 | NC_002512.2 | + | 82964 | 0.66 | 0.683254 |
Target: 5'- aGGUcGCGGCGcaCGGCgCGGAagaCGUCGg -3' miRNA: 3'- gCCGuCGCCGCc-GCUGgGCCU---GCAGC- -5' |
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9015 | 3' | -64 | NC_002512.2 | + | 72803 | 0.66 | 0.692459 |
Target: 5'- gGGCccgccgugGGCGcCGGCGACCCcGGACccCGg -3' miRNA: 3'- gCCG--------UCGCcGCCGCUGGG-CCUGcaGC- -5' |
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9015 | 3' | -64 | NC_002512.2 | + | 58387 | 0.66 | 0.701621 |
Target: 5'- aGGguGaCGGCcaGCGACUCGuuGACGUCu -3' miRNA: 3'- gCCguC-GCCGc-CGCUGGGC--CUGCAGc -5' |
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9015 | 3' | -64 | NC_002512.2 | + | 45207 | 0.66 | 0.674014 |
Target: 5'- cCGGCGGC-GCGGaCGGCCgccgacCGGAUuUCGg -3' miRNA: 3'- -GCCGUCGcCGCC-GCUGG------GCCUGcAGC- -5' |
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9015 | 3' | -64 | NC_002512.2 | + | 43001 | 0.66 | 0.674014 |
Target: 5'- gGGcCAGCaGGCuGCGGUCCGaGGCGUUGg -3' miRNA: 3'- gCC-GUCG-CCGcCGCUGGGC-CUGCAGC- -5' |
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9015 | 3' | -64 | NC_002512.2 | + | 123917 | 0.66 | 0.683254 |
Target: 5'- gCGGgaaGGUGGaCGGCGGgCUGGcCGUCa -3' miRNA: 3'- -GCCg--UCGCC-GCCGCUgGGCCuGCAGc -5' |
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9015 | 3' | -64 | NC_002512.2 | + | 34957 | 0.66 | 0.689701 |
Target: 5'- gCGG-AGCGGCcGCGACCgGGuccggcugggccucGCGUCc -3' miRNA: 3'- -GCCgUCGCCGcCGCUGGgCC--------------UGCAGc -5' |
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9015 | 3' | -64 | NC_002512.2 | + | 43263 | 0.66 | 0.701621 |
Target: 5'- gGGCAGCGaGCuGGUcuCCUGGAggggguCGUCGa -3' miRNA: 3'- gCCGUCGC-CG-CCGcuGGGCCU------GCAGC- -5' |
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9015 | 3' | -64 | NC_002512.2 | + | 74217 | 0.66 | 0.683254 |
Target: 5'- gGGCucGCGGUcccgacgcggGGCGAacggCCGGACGcCGa -3' miRNA: 3'- gCCGu-CGCCG----------CCGCUg---GGCCUGCaGC- -5' |
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9015 | 3' | -64 | NC_002512.2 | + | 123661 | 0.66 | 0.692459 |
Target: 5'- -cGCcGCGGCGGCcgGGCUCGGGgaagcggucCGUCGc -3' miRNA: 3'- gcCGuCGCCGCCG--CUGGGCCU---------GCAGC- -5' |
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9015 | 3' | -64 | NC_002512.2 | + | 25218 | 0.66 | 0.692459 |
Target: 5'- gCGGgAGCGaGCcgccGGCGAuccCCCGcGCGUCGc -3' miRNA: 3'- -GCCgUCGC-CG----CCGCU---GGGCcUGCAGC- -5' |
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9015 | 3' | -64 | NC_002512.2 | + | 59318 | 0.66 | 0.674014 |
Target: 5'- aCGGCGaCGGaggagaacuGCGACCUGGACG-CGg -3' miRNA: 3'- -GCCGUcGCCgc-------CGCUGGGCCUGCaGC- -5' |
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9015 | 3' | -64 | NC_002512.2 | + | 101748 | 0.66 | 0.683254 |
Target: 5'- -cGCga-GGUGGUGGCCCGGGCGcuccgUCGg -3' miRNA: 3'- gcCGucgCCGCCGCUGGGCCUGC-----AGC- -5' |
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9015 | 3' | -64 | NC_002512.2 | + | 4546 | 0.66 | 0.683254 |
Target: 5'- aCGGUgaGGCGGC-GCGACCgaCGGcugcgGCGUCu -3' miRNA: 3'- -GCCG--UCGCCGcCGCUGG--GCC-----UGCAGc -5' |
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9015 | 3' | -64 | NC_002512.2 | + | 57958 | 0.66 | 0.674014 |
Target: 5'- gCGGC-GCGGCgGGCGAagaGGGCGaCGa -3' miRNA: 3'- -GCCGuCGCCG-CCGCUgggCCUGCaGC- -5' |
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9015 | 3' | -64 | NC_002512.2 | + | 126518 | 0.66 | 0.701621 |
Target: 5'- uCGGCGGCucCGGCGGCCU-GACcUCGa -3' miRNA: 3'- -GCCGUCGccGCCGCUGGGcCUGcAGC- -5' |
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9015 | 3' | -64 | NC_002512.2 | + | 46407 | 0.66 | 0.677714 |
Target: 5'- aGGCGGCccgcagcacggccuuGGUGGCGGCgCC-GACGUUc -3' miRNA: 3'- gCCGUCG---------------CCGCCGCUG-GGcCUGCAGc -5' |
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9015 | 3' | -64 | NC_002512.2 | + | 138028 | 0.66 | 0.683254 |
Target: 5'- aCGGCGGCcucGGgGGCaugaGCCgGGACugGUCGa -3' miRNA: 3'- -GCCGUCG---CCgCCGc---UGGgCCUG--CAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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