miRNA display CGI


Results 21 - 40 of 424 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9015 3' -64 NC_002512.2 + 146720 0.77 0.173339
Target:  5'- aCGGCGG-GGCGGCGGCCgCGGcCGcCGg -3'
miRNA:   3'- -GCCGUCgCCGCCGCUGG-GCCuGCaGC- -5'
9015 3' -64 NC_002512.2 + 157139 0.77 0.177366
Target:  5'- uCGGCGGCgggcccggggcgGGCGGCGGgCCGGGCGgCGu -3'
miRNA:   3'- -GCCGUCG------------CCGCCGCUgGGCCUGCaGC- -5'
9015 3' -64 NC_002512.2 + 181589 0.77 0.181475
Target:  5'- gCGGCAGgGGCGGCgGGUCCGcGACGUCc -3'
miRNA:   3'- -GCCGUCgCCGCCG-CUGGGC-CUGCAGc -5'
9015 3' -64 NC_002512.2 + 5261 0.77 0.181476
Target:  5'- aGGCcGCGGCGGCGACCCcGAgcccgGUCGg -3'
miRNA:   3'- gCCGuCGCCGCCGCUGGGcCUg----CAGC- -5'
9015 3' -64 NC_002512.2 + 126774 0.77 0.185669
Target:  5'- gCGGCGGCGGCGGCGACgCGuGcCG-CGc -3'
miRNA:   3'- -GCCGUCGCCGCCGCUGgGC-CuGCaGC- -5'
9015 3' -64 NC_002512.2 + 224982 0.77 0.185669
Target:  5'- gCGGCGGCGGCGGCG-CCCucuuccCGUCGc -3'
miRNA:   3'- -GCCGUCGCCGCCGCuGGGccu---GCAGC- -5'
9015 3' -64 NC_002512.2 + 122023 0.77 0.185669
Target:  5'- aGGCGGCGGauCGGCGcucgcgcacGCCCGGggcgGCGUCGg -3'
miRNA:   3'- gCCGUCGCC--GCCGC---------UGGGCC----UGCAGC- -5'
9015 3' -64 NC_002512.2 + 127099 0.77 0.185669
Target:  5'- gGGCGGCGGCGGCGGCgggagaUGGGCGg-- -3'
miRNA:   3'- gCCGUCGCCGCCGCUGg-----GCCUGCagc -5'
9015 3' -64 NC_002512.2 + 2804 0.77 0.185669
Target:  5'- cCGGCGGcCGGCGG-GACCCGGcGCGggcgCGg -3'
miRNA:   3'- -GCCGUC-GCCGCCgCUGGGCC-UGCa---GC- -5'
9015 3' -64 NC_002512.2 + 154822 0.77 0.193873
Target:  5'- aGGCAGCGGCGGCGGCaguagugUCGGagggggcaGCGUCc -3'
miRNA:   3'- gCCGUCGCCGCCGCUG-------GGCC--------UGCAGc -5'
9015 3' -64 NC_002512.2 + 153436 0.77 0.194314
Target:  5'- aCGGCAGCGGCcGUuccgagaccuGGCCCGGAgGUUGg -3'
miRNA:   3'- -GCCGUCGCCGcCG----------CUGGGCCUgCAGC- -5'
9015 3' -64 NC_002512.2 + 124883 0.77 0.194314
Target:  5'- gGGCGGCGGCcccgucacGGCGACCguuCGG-CGUCGa -3'
miRNA:   3'- gCCGUCGCCG--------CCGCUGG---GCCuGCAGC- -5'
9015 3' -64 NC_002512.2 + 133789 0.76 0.203308
Target:  5'- aCGGCGGCGGCGGgGACgaCGGucGCGcCGg -3'
miRNA:   3'- -GCCGUCGCCGCCgCUGg-GCC--UGCaGC- -5'
9015 3' -64 NC_002512.2 + 189883 0.76 0.20794
Target:  5'- aCGGCGGagaCGGCGGCGGCgaGGACGgCGg -3'
miRNA:   3'- -GCCGUC---GCCGCCGCUGggCCUGCaGC- -5'
9015 3' -64 NC_002512.2 + 4422 0.76 0.20794
Target:  5'- aCGGCGGCugcugguagaccGGCGGgGugCCGGGCG-CGg -3'
miRNA:   3'- -GCCGUCG------------CCGCCgCugGGCCUGCaGC- -5'
9015 3' -64 NC_002512.2 + 156494 0.76 0.212662
Target:  5'- gGGCugGGCGGacaCGGCGGCCUGGGCGgCGg -3'
miRNA:   3'- gCCG--UCGCC---GCCGCUGGGCCUGCaGC- -5'
9015 3' -64 NC_002512.2 + 74819 0.76 0.21554
Target:  5'- cCGGCAGCGGCGGCGGacgaacaacucgguUCgaggggccucccgCGGGCGUCa -3'
miRNA:   3'- -GCCGUCGCCGCCGCU--------------GG-------------GCCUGCAGc -5'
9015 3' -64 NC_002512.2 + 101651 0.75 0.227384
Target:  5'- gGGgAGC-GCGGCGGCCgCGGACGcCGg -3'
miRNA:   3'- gCCgUCGcCGCCGCUGG-GCCUGCaGC- -5'
9015 3' -64 NC_002512.2 + 20787 0.75 0.227384
Target:  5'- gGGaCAcGgGGUGaCGACCCGGACGUCGg -3'
miRNA:   3'- gCC-GU-CgCCGCcGCUGGGCCUGCAGC- -5'
9015 3' -64 NC_002512.2 + 130157 0.75 0.227384
Target:  5'- gGGCccGGCGGCGGgcCGGCCCGcGACGgcgCGg -3'
miRNA:   3'- gCCG--UCGCCGCC--GCUGGGC-CUGCa--GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.