miRNA display CGI


Results 1 - 20 of 424 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9015 3' -64 NC_002512.2 + 170834 1.08 0.001295
Target:  5'- gCGGCAGCGGCGGCGACCCGGACGUCGa -3'
miRNA:   3'- -GCCGUCGCCGCCGCUGGGCCUGCAGC- -5'
9015 3' -64 NC_002512.2 + 83819 0.89 0.028791
Target:  5'- cCGGCGGCGGCGGCuccgGGCCCGGGuCGUCGc -3'
miRNA:   3'- -GCCGUCGCCGCCG----CUGGGCCU-GCAGC- -5'
9015 3' -64 NC_002512.2 + 188651 0.88 0.031812
Target:  5'- cCGGCGGCGGCGGCGGCCCGu-CGUCc -3'
miRNA:   3'- -GCCGUCGCCGCCGCUGGGCcuGCAGc -5'
9015 3' -64 NC_002512.2 + 3072 0.85 0.054876
Target:  5'- gCGGCGGCGGCGGCGGCCaCGG-CGgCGg -3'
miRNA:   3'- -GCCGUCGCCGCCGCUGG-GCCuGCaGC- -5'
9015 3' -64 NC_002512.2 + 96231 0.84 0.059078
Target:  5'- gCGGCGGCGGCGGCGAccgcCCCGGAC-UCc -3'
miRNA:   3'- -GCCGUCGCCGCCGCU----GGGCCUGcAGc -5'
9015 3' -64 NC_002512.2 + 45532 0.84 0.064691
Target:  5'- gGGCGGCGGCGGCGACuuGGGguaccucuucuugcCGUCGc -3'
miRNA:   3'- gCCGUCGCCGCCGCUGggCCU--------------GCAGC- -5'
9015 3' -64 NC_002512.2 + 5159 0.83 0.07545
Target:  5'- aCGGCAGCGGC-GCGACCgGGGCGgCGg -3'
miRNA:   3'- -GCCGUCGCCGcCGCUGGgCCUGCaGC- -5'
9015 3' -64 NC_002512.2 + 44541 0.82 0.081158
Target:  5'- aCGGCgauGGCGGCGGCcACCCGGGCGgCGa -3'
miRNA:   3'- -GCCG---UCGCCGCCGcUGGGCCUGCaGC- -5'
9015 3' -64 NC_002512.2 + 12398 0.82 0.081158
Target:  5'- gGGCGGCGGCGGCGGCgCCGGGa-UCGc -3'
miRNA:   3'- gCCGUCGCCGCCGCUG-GGCCUgcAGC- -5'
9015 3' -64 NC_002512.2 + 148097 0.82 0.08519
Target:  5'- cCGGCGGCGGCGGCGGCgCCGaaGACGaggCGg -3'
miRNA:   3'- -GCCGUCGCCGCCGCUG-GGC--CUGCa--GC- -5'
9015 3' -64 NC_002512.2 + 80639 0.81 0.100855
Target:  5'- cCGGCcguccGCGGCGGCGGCgCCGGGucCGUCGg -3'
miRNA:   3'- -GCCGu----CGCCGCCGCUG-GGCCU--GCAGC- -5'
9015 3' -64 NC_002512.2 + 9525 0.81 0.103304
Target:  5'- aCGGCGGCGGCGGCcacGGCCaCGG-CGUUGa -3'
miRNA:   3'- -GCCGUCGCCGCCG---CUGG-GCCuGCAGC- -5'
9015 3' -64 NC_002512.2 + 158995 0.81 0.105809
Target:  5'- gGGCGGaGGCGGCGGCCCcGGCGUCc -3'
miRNA:   3'- gCCGUCgCCGCCGCUGGGcCUGCAGc -5'
9015 3' -64 NC_002512.2 + 13691 0.8 0.124999
Target:  5'- aCGGCcGCGGCGGUGAUCaCGGGCG-CGa -3'
miRNA:   3'- -GCCGuCGCCGCCGCUGG-GCCUGCaGC- -5'
9015 3' -64 NC_002512.2 + 75286 0.79 0.127991
Target:  5'- gCGGCGGCGGCGGCGACgaugCCGc-CGUCGc -3'
miRNA:   3'- -GCCGUCGCCGCCGCUG----GGCcuGCAGC- -5'
9015 3' -64 NC_002512.2 + 79819 0.79 0.137368
Target:  5'- aCGGCGGCGGCGGCGGuccccccuCCCGcccCGUCGu -3'
miRNA:   3'- -GCCGUCGCCGCCGCU--------GGGCcu-GCAGC- -5'
9015 3' -64 NC_002512.2 + 202531 0.79 0.140632
Target:  5'- gCGGCGGgGGCGGaCGACCCaGGGCucgcaGUCGg -3'
miRNA:   3'- -GCCGUCgCCGCC-GCUGGG-CCUG-----CAGC- -5'
9015 3' -64 NC_002512.2 + 121930 0.78 0.154407
Target:  5'- aGGCGGCGGCGGUcccgGACCCGcGGCGa-- -3'
miRNA:   3'- gCCGUCGCCGCCG----CUGGGC-CUGCagc -5'
9015 3' -64 NC_002512.2 + 17879 0.78 0.159511
Target:  5'- gGGCccgggggacgugauaGGCGGCGGCGGCCCcgaGGACGaCGg -3'
miRNA:   3'- gCCG---------------UCGCCGCCGCUGGG---CCUGCaGC- -5'
9015 3' -64 NC_002512.2 + 169077 0.78 0.165529
Target:  5'- gCGGCGGCGGCGucGCGGCCCGcGuccuCGUCc -3'
miRNA:   3'- -GCCGUCGCCGC--CGCUGGGC-Cu---GCAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.