miRNA display CGI


Results 1 - 20 of 424 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9015 3' -64 NC_002512.2 + 101651 0.75 0.227384
Target:  5'- gGGgAGC-GCGGCGGCCgCGGACGcCGg -3'
miRNA:   3'- gCCgUCGcCGCCGCUGG-GCCUGCaGC- -5'
9015 3' -64 NC_002512.2 + 5261 0.77 0.181476
Target:  5'- aGGCcGCGGCGGCGACCCcGAgcccgGUCGg -3'
miRNA:   3'- gCCGuCGCCGCCGCUGGGcCUg----CAGC- -5'
9015 3' -64 NC_002512.2 + 122023 0.77 0.185669
Target:  5'- aGGCGGCGGauCGGCGcucgcgcacGCCCGGggcgGCGUCGg -3'
miRNA:   3'- gCCGUCGCC--GCCGC---------UGGGCC----UGCAGC- -5'
9015 3' -64 NC_002512.2 + 2804 0.77 0.185669
Target:  5'- cCGGCGGcCGGCGG-GACCCGGcGCGggcgCGg -3'
miRNA:   3'- -GCCGUC-GCCGCCgCUGGGCC-UGCa---GC- -5'
9015 3' -64 NC_002512.2 + 154822 0.77 0.193873
Target:  5'- aGGCAGCGGCGGCGGCaguagugUCGGagggggcaGCGUCc -3'
miRNA:   3'- gCCGUCGCCGCCGCUG-------GGCC--------UGCAGc -5'
9015 3' -64 NC_002512.2 + 153436 0.77 0.194314
Target:  5'- aCGGCAGCGGCcGUuccgagaccuGGCCCGGAgGUUGg -3'
miRNA:   3'- -GCCGUCGCCGcCG----------CUGGGCCUgCAGC- -5'
9015 3' -64 NC_002512.2 + 133789 0.76 0.203308
Target:  5'- aCGGCGGCGGCGGgGACgaCGGucGCGcCGg -3'
miRNA:   3'- -GCCGUCGCCGCCgCUGg-GCC--UGCaGC- -5'
9015 3' -64 NC_002512.2 + 4422 0.76 0.20794
Target:  5'- aCGGCGGCugcugguagaccGGCGGgGugCCGGGCG-CGg -3'
miRNA:   3'- -GCCGUCG------------CCGCCgCugGGCCUGCaGC- -5'
9015 3' -64 NC_002512.2 + 20787 0.75 0.227384
Target:  5'- gGGaCAcGgGGUGaCGACCCGGACGUCGg -3'
miRNA:   3'- gCC-GU-CgCCGCcGCUGGGCCUGCAGC- -5'
9015 3' -64 NC_002512.2 + 17879 0.78 0.159511
Target:  5'- gGGCccgggggacgugauaGGCGGCGGCGGCCCcgaGGACGaCGg -3'
miRNA:   3'- gCCG---------------UCGCCGCCGCUGGG---CCUGCaGC- -5'
9015 3' -64 NC_002512.2 + 121930 0.78 0.154407
Target:  5'- aGGCGGCGGCGGUcccgGACCCGcGGCGa-- -3'
miRNA:   3'- gCCGUCGCCGCCG----CUGGGC-CUGCagc -5'
9015 3' -64 NC_002512.2 + 79819 0.79 0.137368
Target:  5'- aCGGCGGCGGCGGCGGuccccccuCCCGcccCGUCGu -3'
miRNA:   3'- -GCCGUCGCCGCCGCU--------GGGCcu-GCAGC- -5'
9015 3' -64 NC_002512.2 + 3072 0.85 0.054876
Target:  5'- gCGGCGGCGGCGGCGGCCaCGG-CGgCGg -3'
miRNA:   3'- -GCCGUCGCCGCCGCUGG-GCCuGCaGC- -5'
9015 3' -64 NC_002512.2 + 45532 0.84 0.064691
Target:  5'- gGGCGGCGGCGGCGACuuGGGguaccucuucuugcCGUCGc -3'
miRNA:   3'- gCCGUCGCCGCCGCUGggCCU--------------GCAGC- -5'
9015 3' -64 NC_002512.2 + 5159 0.83 0.07545
Target:  5'- aCGGCAGCGGC-GCGACCgGGGCGgCGg -3'
miRNA:   3'- -GCCGUCGCCGcCGCUGGgCCUGCaGC- -5'
9015 3' -64 NC_002512.2 + 12398 0.82 0.081158
Target:  5'- gGGCGGCGGCGGCGGCgCCGGGa-UCGc -3'
miRNA:   3'- gCCGUCGCCGCCGCUG-GGCCUgcAGC- -5'
9015 3' -64 NC_002512.2 + 44541 0.82 0.081158
Target:  5'- aCGGCgauGGCGGCGGCcACCCGGGCGgCGa -3'
miRNA:   3'- -GCCG---UCGCCGCCGcUGGGCCUGCaGC- -5'
9015 3' -64 NC_002512.2 + 80639 0.81 0.100855
Target:  5'- cCGGCcguccGCGGCGGCGGCgCCGGGucCGUCGg -3'
miRNA:   3'- -GCCGu----CGCCGCCGCUG-GGCCU--GCAGC- -5'
9015 3' -64 NC_002512.2 + 9525 0.81 0.103304
Target:  5'- aCGGCGGCGGCGGCcacGGCCaCGG-CGUUGa -3'
miRNA:   3'- -GCCGUCGCCGCCG---CUGG-GCCuGCAGC- -5'
9015 3' -64 NC_002512.2 + 13691 0.8 0.124999
Target:  5'- aCGGCcGCGGCGGUGAUCaCGGGCG-CGa -3'
miRNA:   3'- -GCCGuCGCCGCCGCUGG-GCCUGCaGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.