miRNA display CGI


Results 1 - 20 of 424 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9015 3' -64 NC_002512.2 + 215067 0.66 0.719795
Target:  5'- uCGGCGGCgucuaccgcgucGGCGG-GACCgaGGAcuuCGUCGc -3'
miRNA:   3'- -GCCGUCG------------CCGCCgCUGGg-CCU---GCAGC- -5'
9015 3' -64 NC_002512.2 + 219334 0.66 0.701621
Target:  5'- uCGGC-GUGGCccgccGGCuGCCCGG-CGUCc -3'
miRNA:   3'- -GCCGuCGCCG-----CCGcUGGGCCuGCAGc -5'
9015 3' -64 NC_002512.2 + 115267 0.66 0.701621
Target:  5'- aGGCGGCGGgGaGCG-CCUGGcCGg-- -3'
miRNA:   3'- gCCGUCGCCgC-CGCuGGGCCuGCagc -5'
9015 3' -64 NC_002512.2 + 170834 1.08 0.001295
Target:  5'- gCGGCAGCGGCGGCGACCCGGACGUCGa -3'
miRNA:   3'- -GCCGUCGCCGCCGCUGGGCCUGCAGC- -5'
9015 3' -64 NC_002512.2 + 229588 0.66 0.719795
Target:  5'- gGGaCGGgGGCGagaaGgGGCCCGGGCGg-- -3'
miRNA:   3'- gCC-GUCgCCGC----CgCUGGGCCUGCagc -5'
9015 3' -64 NC_002512.2 + 131676 0.66 0.719795
Target:  5'- gGGCcGCgagGGCGGUGAgCCCGGAgCG-Ca -3'
miRNA:   3'- gCCGuCG---CCGCCGCU-GGGCCU-GCaGc -5'
9015 3' -64 NC_002512.2 + 76093 0.66 0.718892
Target:  5'- cCGGCgaucggaagcugaGGCGGgGGCG-CCgGGGuggUGUCGa -3'
miRNA:   3'- -GCCG-------------UCGCCgCCGCuGGgCCU---GCAGC- -5'
9015 3' -64 NC_002512.2 + 169547 0.66 0.710736
Target:  5'- cCGGCuGCccGGCGGCGuggccuuCgCCGG-CGUCu -3'
miRNA:   3'- -GCCGuCG--CCGCCGCu------G-GGCCuGCAGc -5'
9015 3' -64 NC_002512.2 + 95783 0.66 0.710736
Target:  5'- gGGCguccgAGCGGUaGGCG-CCgGGGCG-CGg -3'
miRNA:   3'- gCCG-----UCGCCG-CCGCuGGgCCUGCaGC- -5'
9015 3' -64 NC_002512.2 + 103511 0.66 0.701621
Target:  5'- gGGCAGCGcGuUGGUGACCagcaGGAaGUUGc -3'
miRNA:   3'- gCCGUCGC-C-GCCGCUGGg---CCUgCAGC- -5'
9015 3' -64 NC_002512.2 + 101273 0.66 0.709827
Target:  5'- gGGgAGCguacacgGGCaGGU-ACCCGGACGUCc -3'
miRNA:   3'- gCCgUCG-------CCG-CCGcUGGGCCUGCAGc -5'
9015 3' -64 NC_002512.2 + 134679 0.66 0.710736
Target:  5'- aCGaCAaCGGaCGcGCGACCgCGGACGUCc -3'
miRNA:   3'- -GCcGUcGCC-GC-CGCUGG-GCCUGCAGc -5'
9015 3' -64 NC_002512.2 + 175274 0.66 0.719795
Target:  5'- gGGUAGCuGGCGGcCGcguacacguACUCGGggugcaGCGUCGa -3'
miRNA:   3'- gCCGUCG-CCGCC-GC---------UGGGCC------UGCAGC- -5'
9015 3' -64 NC_002512.2 + 160896 0.66 0.708007
Target:  5'- uCGGgaAGCGG-GGCGGCCgGGGCaagggacgcggacaGUCGc -3'
miRNA:   3'- -GCCg-UCGCCgCCGCUGGgCCUG--------------CAGC- -5'
9015 3' -64 NC_002512.2 + 154324 0.66 0.719795
Target:  5'- aCGGCGGCGGCcccgccccGGCGAgcCCgCGGAUu--- -3'
miRNA:   3'- -GCCGUCGCCG--------CCGCU--GG-GCCUGcagc -5'
9015 3' -64 NC_002512.2 + 204819 0.66 0.710736
Target:  5'- cCGGgGGC-GCGGCGGCUCcguccgggaGGACGaCGg -3'
miRNA:   3'- -GCCgUCGcCGCCGCUGGG---------CCUGCaGC- -5'
9015 3' -64 NC_002512.2 + 187677 0.66 0.701621
Target:  5'- aCGGCGGCgGGCGGaGGCaCCGGGaaccCGa -3'
miRNA:   3'- -GCCGUCG-CCGCCgCUG-GGCCUgca-GC- -5'
9015 3' -64 NC_002512.2 + 207901 0.66 0.701621
Target:  5'- uCGGCGGUGGCuccucgacGCGgagcucgaacggGCCCGGugGUg- -3'
miRNA:   3'- -GCCGUCGCCGc-------CGC------------UGGGCCugCAgc -5'
9015 3' -64 NC_002512.2 + 118080 0.66 0.719795
Target:  5'- -cGCAGaCGuucGCGGCGACCaacaacccgUGGGCGUCc -3'
miRNA:   3'- gcCGUC-GC---CGCCGCUGG---------GCCUGCAGc -5'
9015 3' -64 NC_002512.2 + 185 0.66 0.719795
Target:  5'- gGGaCGGgGGCGagaaGgGGCCCGGGCGg-- -3'
miRNA:   3'- gCC-GUCgCCGC----CgCUGGGCCUGCagc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.