miRNA display CGI


Results 1 - 20 of 424 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9015 3' -64 NC_002512.2 + 13626 0.66 0.674014
Target:  5'- uGGCGGUgcgGGCGGCGcACCUGauGACGa-- -3'
miRNA:   3'- gCCGUCG---CCGCCGC-UGGGC--CUGCagc -5'
9015 3' -64 NC_002512.2 + 74217 0.66 0.683254
Target:  5'- gGGCucGCGGUcccgacgcggGGCGAacggCCGGACGcCGa -3'
miRNA:   3'- gCCGu-CGCCG----------CCGCUg---GGCCUGCaGC- -5'
9015 3' -64 NC_002512.2 + 4546 0.66 0.683254
Target:  5'- aCGGUgaGGCGGC-GCGACCgaCGGcugcgGCGUCu -3'
miRNA:   3'- -GCCG--UCGCCGcCGCUGG--GCC-----UGCAGc -5'
9015 3' -64 NC_002512.2 + 81199 0.66 0.674014
Target:  5'- gGGCGaaGGCGGCGACgaGGGCcaCGg -3'
miRNA:   3'- gCCGUcgCCGCCGCUGggCCUGcaGC- -5'
9015 3' -64 NC_002512.2 + 43001 0.66 0.674014
Target:  5'- gGGcCAGCaGGCuGCGGUCCGaGGCGUUGg -3'
miRNA:   3'- gCC-GUCG-CCGcCGCUGGGC-CUGCAGC- -5'
9015 3' -64 NC_002512.2 + 59318 0.66 0.674014
Target:  5'- aCGGCGaCGGaggagaacuGCGACCUGGACG-CGg -3'
miRNA:   3'- -GCCGUcGCCgc-------CGCUGGGCCUGCaGC- -5'
9015 3' -64 NC_002512.2 + 138028 0.66 0.683254
Target:  5'- aCGGCGGCcucGGgGGCaugaGCCgGGACugGUCGa -3'
miRNA:   3'- -GCCGUCG---CCgCCGc---UGGgCCUG--CAGC- -5'
9015 3' -64 NC_002512.2 + 123917 0.66 0.683254
Target:  5'- gCGGgaaGGUGGaCGGCGGgCUGGcCGUCa -3'
miRNA:   3'- -GCCg--UCGCC-GCCGCUgGGCCuGCAGc -5'
9015 3' -64 NC_002512.2 + 9230 0.66 0.683254
Target:  5'- gCGGCGGgccaGGUGGCG-CUCGcgccacaggacGACGUCGu -3'
miRNA:   3'- -GCCGUCg---CCGCCGCuGGGC-----------CUGCAGC- -5'
9015 3' -64 NC_002512.2 + 59721 0.66 0.674014
Target:  5'- uGGCGcacaUGGCGGUGAUCCGGGCc--- -3'
miRNA:   3'- gCCGUc---GCCGCCGCUGGGCCUGcagc -5'
9015 3' -64 NC_002512.2 + 82964 0.66 0.683254
Target:  5'- aGGUcGCGGCGcaCGGCgCGGAagaCGUCGg -3'
miRNA:   3'- gCCGuCGCCGCc-GCUGgGCCU---GCAGC- -5'
9015 3' -64 NC_002512.2 + 57958 0.66 0.674014
Target:  5'- gCGGC-GCGGCgGGCGAagaGGGCGaCGa -3'
miRNA:   3'- -GCCGuCGCCG-CCGCUgggCCUGCaGC- -5'
9015 3' -64 NC_002512.2 + 45207 0.66 0.674014
Target:  5'- cCGGCGGC-GCGGaCGGCCgccgacCGGAUuUCGg -3'
miRNA:   3'- -GCCGUCGcCGCC-GCUGG------GCCUGcAGC- -5'
9015 3' -64 NC_002512.2 + 51261 0.66 0.677714
Target:  5'- aGGCGGCGgaaaccuacguggacGCGGCGACCgaguCGG-CGgCGg -3'
miRNA:   3'- gCCGUCGC---------------CGCCGCUGG----GCCuGCaGC- -5'
9015 3' -64 NC_002512.2 + 20296 0.66 0.674014
Target:  5'- uGGaC-GUGGCGGUGACCgugcCGGACGagGa -3'
miRNA:   3'- gCC-GuCGCCGCCGCUGG----GCCUGCagC- -5'
9015 3' -64 NC_002512.2 + 99897 0.66 0.680485
Target:  5'- aGGC-GCGGCccgucgagggcgccGGgGGCCCGccgaagggcGGCGUCGg -3'
miRNA:   3'- gCCGuCGCCG--------------CCgCUGGGC---------CUGCAGC- -5'
9015 3' -64 NC_002512.2 + 46407 0.66 0.677714
Target:  5'- aGGCGGCccgcagcacggccuuGGUGGCGGCgCC-GACGUUc -3'
miRNA:   3'- gCCGUCG---------------CCGCCGCUG-GGcCUGCAGc -5'
9015 3' -64 NC_002512.2 + 107503 0.66 0.674014
Target:  5'- -cGCAGCGgucucuGCGGCugGACCCGGAaccCGuUCGg -3'
miRNA:   3'- gcCGUCGC------CGCCG--CUGGGCCU---GC-AGC- -5'
9015 3' -64 NC_002512.2 + 101598 0.66 0.683254
Target:  5'- gCGGUcguGCgGGCGGCcgucGGCCCGG-CGcCGg -3'
miRNA:   3'- -GCCGu--CG-CCGCCG----CUGGGCCuGCaGC- -5'
9015 3' -64 NC_002512.2 + 130765 0.66 0.674014
Target:  5'- cCGGCcGUGcGCGaucucuuggaGCGGCCCGGGC-UCGc -3'
miRNA:   3'- -GCCGuCGC-CGC----------CGCUGGGCCUGcAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.