miRNA display CGI


Results 1 - 20 of 424 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9015 3' -64 NC_002512.2 + 162 0.69 0.526417
Target:  5'- gCGGCAGgaGGCGGCagaggaGGCCggaGGGCGUgGg -3'
miRNA:   3'- -GCCGUCg-CCGCCG------CUGGg--CCUGCAgC- -5'
9015 3' -64 NC_002512.2 + 185 0.66 0.719795
Target:  5'- gGGaCGGgGGCGagaaGgGGCCCGGGCGg-- -3'
miRNA:   3'- gCC-GUCgCCGC----CgCUGGGCCUGCagc -5'
9015 3' -64 NC_002512.2 + 2093 0.71 0.432027
Target:  5'- gCGGgAGCgGGCGGUacGGCCgcggcucggucgCGGGCGUCGa -3'
miRNA:   3'- -GCCgUCG-CCGCCG--CUGG------------GCCUGCAGC- -5'
9015 3' -64 NC_002512.2 + 2220 0.66 0.701621
Target:  5'- cCGGCGGCGccGCcGCucuuccuccgGACCCGGGCGcUCc -3'
miRNA:   3'- -GCCGUCGC--CGcCG----------CUGGGCCUGC-AGc -5'
9015 3' -64 NC_002512.2 + 2804 0.77 0.185669
Target:  5'- cCGGCGGcCGGCGG-GACCCGGcGCGggcgCGg -3'
miRNA:   3'- -GCCGUC-GCCGCCgCUGGGCC-UGCa---GC- -5'
9015 3' -64 NC_002512.2 + 3072 0.85 0.054876
Target:  5'- gCGGCGGCGGCGGCGGCCaCGG-CGgCGg -3'
miRNA:   3'- -GCCGUCGCCGCCGCUGG-GCCuGCaGC- -5'
9015 3' -64 NC_002512.2 + 3205 0.69 0.541738
Target:  5'- gGGCGaCGGCccGGCgcucagagagucugGACCCGGcGCGUCGg -3'
miRNA:   3'- gCCGUcGCCG--CCG--------------CUGGGCC-UGCAGC- -5'
9015 3' -64 NC_002512.2 + 4215 0.72 0.369931
Target:  5'- uGGgAGCGGCcgcGGgGAgCgGGACGUCGa -3'
miRNA:   3'- gCCgUCGCCG---CCgCUgGgCCUGCAGC- -5'
9015 3' -64 NC_002512.2 + 4422 0.76 0.20794
Target:  5'- aCGGCGGCugcugguagaccGGCGGgGugCCGGGCG-CGg -3'
miRNA:   3'- -GCCGUCG------------CCGCCgCugGGCCUGCaGC- -5'
9015 3' -64 NC_002512.2 + 4546 0.66 0.683254
Target:  5'- aCGGUgaGGCGGC-GCGACCgaCGGcugcgGCGUCu -3'
miRNA:   3'- -GCCG--UCGCCGcCGCUGG--GCC-----UGCAGc -5'
9015 3' -64 NC_002512.2 + 4582 0.7 0.445988
Target:  5'- gGGCGGCGGaggaGGCGGCgCCgcgggccgcgagacGGACGcCGa -3'
miRNA:   3'- gCCGUCGCCg---CCGCUG-GG--------------CCUGCaGC- -5'
9015 3' -64 NC_002512.2 + 4622 0.74 0.295031
Target:  5'- uCGGCcuGuCGGUGGUGACCUGGACGg-- -3'
miRNA:   3'- -GCCGu-C-GCCGCCGCUGGGCCUGCagc -5'
9015 3' -64 NC_002512.2 + 4653 0.66 0.710736
Target:  5'- aCGGgAGCGGaGGCccCgCCGGcGCGUCGa -3'
miRNA:   3'- -GCCgUCGCCgCCGcuG-GGCC-UGCAGC- -5'
9015 3' -64 NC_002512.2 + 5159 0.83 0.07545
Target:  5'- aCGGCAGCGGC-GCGACCgGGGCGgCGg -3'
miRNA:   3'- -GCCGUCGCCGcCGCUGGgCCUGCaGC- -5'
9015 3' -64 NC_002512.2 + 5214 0.66 0.710736
Target:  5'- gGGcCAGCcgacGGCGGCGggaaagucgaACUCGGGCG-CGu -3'
miRNA:   3'- gCC-GUCG----CCGCCGC----------UGGGCCUGCaGC- -5'
9015 3' -64 NC_002512.2 + 5261 0.77 0.181476
Target:  5'- aGGCcGCGGCGGCGACCCcGAgcccgGUCGg -3'
miRNA:   3'- gCCGuCGCCGCCGCUGGGcCUg----CAGC- -5'
9015 3' -64 NC_002512.2 + 5855 0.71 0.432027
Target:  5'- cCGGCGGCcccGuCGGaGuCCCGGGCGUCGu -3'
miRNA:   3'- -GCCGUCGc--C-GCCgCuGGGCCUGCAGC- -5'
9015 3' -64 NC_002512.2 + 6345 0.66 0.719795
Target:  5'- gGGCGcGgGGcCGGCgGGCCgCGGGCG-CGu -3'
miRNA:   3'- gCCGU-CgCC-GCCG-CUGG-GCCUGCaGC- -5'
9015 3' -64 NC_002512.2 + 6412 0.75 0.23248
Target:  5'- gCGGCGGCGGCgcuggggaaGGCGGCCgucuggCGGGCGcCGa -3'
miRNA:   3'- -GCCGUCGCCG---------CCGCUGG------GCCUGCaGC- -5'
9015 3' -64 NC_002512.2 + 6826 0.69 0.544457
Target:  5'- uCGGCcaCGGUGGCGAccaggggcaccuCCCGGACcUCGc -3'
miRNA:   3'- -GCCGucGCCGCCGCU------------GGGCCUGcAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.