miRNA display CGI


Results 1 - 20 of 424 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9015 3' -64 NC_002512.2 + 229588 0.66 0.719795
Target:  5'- gGGaCGGgGGCGagaaGgGGCCCGGGCGg-- -3'
miRNA:   3'- gCC-GUCgCCGC----CgCUGGGCCUGCagc -5'
9015 3' -64 NC_002512.2 + 229565 0.69 0.526417
Target:  5'- gCGGCAGgaGGCGGCagaggaGGCCggaGGGCGUgGg -3'
miRNA:   3'- -GCCGUCg-CCGCCG------CUGGg--CCUGCAgC- -5'
9015 3' -64 NC_002512.2 + 229521 0.7 0.460198
Target:  5'- aGGCGGCGGagaaaaggagaacgcCGGgGAgCCGGGCGgggCGc -3'
miRNA:   3'- gCCGUCGCC---------------GCCgCUgGGCCUGCa--GC- -5'
9015 3' -64 NC_002512.2 + 228592 0.66 0.680485
Target:  5'- uCGGCGGCaGGCGcCGGaccagguggaggagUCCGGuCGUCGu -3'
miRNA:   3'- -GCCGUCG-CCGCcGCU--------------GGGCCuGCAGC- -5'
9015 3' -64 NC_002512.2 + 228227 0.69 0.526417
Target:  5'- gGGCgAGaCGGCGGgaagggcgaaCGugCCGGACG-CGg -3'
miRNA:   3'- gCCG-UC-GCCGCC----------GCugGGCCUGCaGC- -5'
9015 3' -64 NC_002512.2 + 228032 0.69 0.544457
Target:  5'- gGGCgaccGGaCGGCGGCGAgacgcCCgCGGACGgcugCGg -3'
miRNA:   3'- gCCG----UC-GCCGCCGCU-----GG-GCCUGCa---GC- -5'
9015 3' -64 NC_002512.2 + 227704 0.66 0.674014
Target:  5'- aCGGCGGCGGgGGCGcgguacgguCCCcGACuccUCGa -3'
miRNA:   3'- -GCCGUCGCCgCCGCu--------GGGcCUGc--AGC- -5'
9015 3' -64 NC_002512.2 + 227674 0.67 0.608899
Target:  5'- gCGGCGGCGccgcCGGCGACC-GaGACGaCGa -3'
miRNA:   3'- -GCCGUCGCc---GCCGCUGGgC-CUGCaGC- -5'
9015 3' -64 NC_002512.2 + 227624 0.72 0.377353
Target:  5'- gGGCGGCGGCGGCGAggUCaGGCGaCGg -3'
miRNA:   3'- gCCGUCGCCGCCGCUg-GGcCUGCaGC- -5'
9015 3' -64 NC_002512.2 + 227224 0.66 0.710736
Target:  5'- aGGCGGCGGaccgggaGGCGcggCGGACGggCGg -3'
miRNA:   3'- gCCGUCGCCg------CCGCuggGCCUGCa-GC- -5'
9015 3' -64 NC_002512.2 + 227190 0.66 0.683254
Target:  5'- gGGgAGCGGCaGGCGcuCCCGcGCG-CGg -3'
miRNA:   3'- gCCgUCGCCG-CCGCu-GGGCcUGCaGC- -5'
9015 3' -64 NC_002512.2 + 226693 0.67 0.643358
Target:  5'- gGGCcgucgcccGCGGCGGCGucgagcgacgggagGCCgCGGGCGaCGa -3'
miRNA:   3'- gCCGu-------CGCCGCCGC--------------UGG-GCCUGCaGC- -5'
9015 3' -64 NC_002512.2 + 226471 0.67 0.664746
Target:  5'- aGGCGGgaggaGGCcGgGGCCCGGGCGcUCc -3'
miRNA:   3'- gCCGUCg----CCGcCgCUGGGCCUGC-AGc -5'
9015 3' -64 NC_002512.2 + 225983 0.66 0.674014
Target:  5'- cCGGUcucGGgGGCaaGGgGACCgGGACGcCGg -3'
miRNA:   3'- -GCCG---UCgCCG--CCgCUGGgCCUGCaGC- -5'
9015 3' -64 NC_002512.2 + 225802 0.67 0.608899
Target:  5'- gGGCcgcgGGCGGCcgGGUGGCCUgGGACcUCGa -3'
miRNA:   3'- gCCG----UCGCCG--CCGCUGGG-CCUGcAGC- -5'
9015 3' -64 NC_002512.2 + 225504 0.66 0.692459
Target:  5'- gGGCcGCcGCGGgGGuCCCGGGCuUCGc -3'
miRNA:   3'- gCCGuCGcCGCCgCU-GGGCCUGcAGC- -5'
9015 3' -64 NC_002512.2 + 224982 0.77 0.185669
Target:  5'- gCGGCGGCGGCGGCG-CCCucuuccCGUCGc -3'
miRNA:   3'- -GCCGUCGCCGCCGCuGGGccu---GCAGC- -5'
9015 3' -64 NC_002512.2 + 223939 0.66 0.710736
Target:  5'- uCGGUAcacGCGGCuGUGACCCcuGCGUCc -3'
miRNA:   3'- -GCCGU---CGCCGcCGCUGGGccUGCAGc -5'
9015 3' -64 NC_002512.2 + 223906 0.67 0.646151
Target:  5'- gCGGgAGCGGCgcgggcgagaGGuCGAgCCGGACGg-- -3'
miRNA:   3'- -GCCgUCGCCG----------CC-GCUgGGCCUGCagc -5'
9015 3' -64 NC_002512.2 + 223800 0.7 0.490184
Target:  5'- gGGaCGuCGGCGGCGACCgccgggacgacgaCGGcGCGUCGg -3'
miRNA:   3'- gCC-GUcGCCGCCGCUGG-------------GCC-UGCAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.