miRNA display CGI


Results 21 - 40 of 424 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9015 3' -64 NC_002512.2 + 134679 0.66 0.710736
Target:  5'- aCGaCAaCGGaCGcGCGACCgCGGACGUCc -3'
miRNA:   3'- -GCcGUcGCC-GC-CGCUGG-GCCUGCAGc -5'
9015 3' -64 NC_002512.2 + 15840 0.66 0.710736
Target:  5'- aGGUAGaCGGCGGUGA--CGGGCGa-- -3'
miRNA:   3'- gCCGUC-GCCGCCGCUggGCCUGCagc -5'
9015 3' -64 NC_002512.2 + 4653 0.66 0.710736
Target:  5'- aCGGgAGCGGaGGCccCgCCGGcGCGUCGa -3'
miRNA:   3'- -GCCgUCGCCgCCGcuG-GGCC-UGCAGC- -5'
9015 3' -64 NC_002512.2 + 169547 0.66 0.710736
Target:  5'- cCGGCuGCccGGCGGCGuggccuuCgCCGG-CGUCu -3'
miRNA:   3'- -GCCGuCG--CCGCCGCu------G-GGCCuGCAGc -5'
9015 3' -64 NC_002512.2 + 81693 0.66 0.710736
Target:  5'- -cGCAGCu-CGGCGGCCgGGAgggUGUCGa -3'
miRNA:   3'- gcCGUCGccGCCGCUGGgCCU---GCAGC- -5'
9015 3' -64 NC_002512.2 + 48216 0.66 0.710736
Target:  5'- cCGGCcGCGG-GGCGcgacuaccuguACCgGGACG-CGg -3'
miRNA:   3'- -GCCGuCGCCgCCGC-----------UGGgCCUGCaGC- -5'
9015 3' -64 NC_002512.2 + 75054 0.66 0.710736
Target:  5'- aCGGagGGCGGgGGaGACCgGGcggcgACGUCGa -3'
miRNA:   3'- -GCCg-UCGCCgCCgCUGGgCC-----UGCAGC- -5'
9015 3' -64 NC_002512.2 + 223939 0.66 0.710736
Target:  5'- uCGGUAcacGCGGCuGUGACCCcuGCGUCc -3'
miRNA:   3'- -GCCGU---CGCCGcCGCUGGGccUGCAGc -5'
9015 3' -64 NC_002512.2 + 55236 0.66 0.710736
Target:  5'- gCGGCAccuggagaacGUGcCGGaCGACCCGGACuUCa -3'
miRNA:   3'- -GCCGU----------CGCcGCC-GCUGGGCCUGcAGc -5'
9015 3' -64 NC_002512.2 + 101273 0.66 0.709827
Target:  5'- gGGgAGCguacacgGGCaGGU-ACCCGGACGUCc -3'
miRNA:   3'- gCCgUCG-------CCG-CCGcUGGGCCUGCAGc -5'
9015 3' -64 NC_002512.2 + 62867 0.66 0.708007
Target:  5'- gGGCAGCacggGGCcGCGACgCCGGugaagccguagaagGCGUUGc -3'
miRNA:   3'- gCCGUCG----CCGcCGCUG-GGCC--------------UGCAGC- -5'
9015 3' -64 NC_002512.2 + 160896 0.66 0.708007
Target:  5'- uCGGgaAGCGG-GGCGGCCgGGGCaagggacgcggacaGUCGc -3'
miRNA:   3'- -GCCg-UCGCCgCCGCUGGgCCUG--------------CAGC- -5'
9015 3' -64 NC_002512.2 + 72000 0.66 0.705273
Target:  5'- uGGCAGCGGUacaggaggaacgccaGGCcGCCCuGGAUGg-- -3'
miRNA:   3'- gCCGUCGCCG---------------CCGcUGGG-CCUGCagc -5'
9015 3' -64 NC_002512.2 + 126518 0.66 0.701621
Target:  5'- uCGGCGGCucCGGCGGCCU-GACcUCGa -3'
miRNA:   3'- -GCCGUCGccGCCGCUGGGcCUGcAGC- -5'
9015 3' -64 NC_002512.2 + 108829 0.66 0.701621
Target:  5'- cCGcGCcucgGGCGGCGGguaccCGGCCCaGAgGUCGc -3'
miRNA:   3'- -GC-CG----UCGCCGCC-----GCUGGGcCUgCAGC- -5'
9015 3' -64 NC_002512.2 + 152430 0.66 0.701621
Target:  5'- cCGGCGacGCGcGUGGCGAUuucgaCGGGCGcgCGg -3'
miRNA:   3'- -GCCGU--CGC-CGCCGCUGg----GCCUGCa-GC- -5'
9015 3' -64 NC_002512.2 + 43263 0.66 0.701621
Target:  5'- gGGCAGCGaGCuGGUcuCCUGGAggggguCGUCGa -3'
miRNA:   3'- gCCGUCGC-CG-CCGcuGGGCCU------GCAGC- -5'
9015 3' -64 NC_002512.2 + 58387 0.66 0.701621
Target:  5'- aGGguGaCGGCcaGCGACUCGuuGACGUCu -3'
miRNA:   3'- gCCguC-GCCGc-CGCUGGGC--CUGCAGc -5'
9015 3' -64 NC_002512.2 + 2220 0.66 0.701621
Target:  5'- cCGGCGGCGccGCcGCucuuccuccgGACCCGGGCGcUCc -3'
miRNA:   3'- -GCCGUCGC--CGcCG----------CUGGGCCUGC-AGc -5'
9015 3' -64 NC_002512.2 + 187677 0.66 0.701621
Target:  5'- aCGGCGGCgGGCGGaGGCaCCGGGaaccCGa -3'
miRNA:   3'- -GCCGUCG-CCGCCgCUG-GGCCUgca-GC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.