miRNA display CGI


Results 41 - 60 of 424 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9015 3' -64 NC_002512.2 + 152430 0.66 0.701621
Target:  5'- cCGGCGacGCGcGUGGCGAUuucgaCGGGCGcgCGg -3'
miRNA:   3'- -GCCGU--CGC-CGCCGCUGg----GCCUGCa-GC- -5'
9015 3' -64 NC_002512.2 + 2220 0.66 0.701621
Target:  5'- cCGGCGGCGccGCcGCucuuccuccgGACCCGGGCGcUCc -3'
miRNA:   3'- -GCCGUCGC--CGcCG----------CUGGGCCUGC-AGc -5'
9015 3' -64 NC_002512.2 + 43263 0.66 0.701621
Target:  5'- gGGCAGCGaGCuGGUcuCCUGGAggggguCGUCGa -3'
miRNA:   3'- gCCGUCGC-CG-CCGcuGGGCCU------GCAGC- -5'
9015 3' -64 NC_002512.2 + 108829 0.66 0.701621
Target:  5'- cCGcGCcucgGGCGGCGGguaccCGGCCCaGAgGUCGc -3'
miRNA:   3'- -GC-CG----UCGCCGCC-----GCUGGGcCUgCAGC- -5'
9015 3' -64 NC_002512.2 + 126518 0.66 0.701621
Target:  5'- uCGGCGGCucCGGCGGCCU-GACcUCGa -3'
miRNA:   3'- -GCCGUCGccGCCGCUGGGcCUGcAGC- -5'
9015 3' -64 NC_002512.2 + 101704 0.66 0.700707
Target:  5'- cCGGCGGCccgcuCGGCGAccucgucCCCGGGC-UCGu -3'
miRNA:   3'- -GCCGUCGcc---GCCGCU-------GGGCCUGcAGC- -5'
9015 3' -64 NC_002512.2 + 88129 0.66 0.700707
Target:  5'- aCGGC-GCGGCGGaUGuaggggacgauccGCCCGuGGcCGUCGu -3'
miRNA:   3'- -GCCGuCGCCGCC-GC-------------UGGGC-CU-GCAGC- -5'
9015 3' -64 NC_002512.2 + 104987 0.66 0.700707
Target:  5'- aGGUAGgGGaGGUaGCCCGGguuccgcacgggcGCGUCGa -3'
miRNA:   3'- gCCGUCgCCgCCGcUGGGCC-------------UGCAGC- -5'
9015 3' -64 NC_002512.2 + 64290 0.66 0.698877
Target:  5'- gCGGUAGgGaggccaguuggggaGCGGCuGCCCGGccaccACGUCGc -3'
miRNA:   3'- -GCCGUCgC--------------CGCCGcUGGGCC-----UGCAGC- -5'
9015 3' -64 NC_002512.2 + 113541 0.66 0.692459
Target:  5'- aGGCcGCGGgCcGCGuugaacGCCUGGugGUCGc -3'
miRNA:   3'- gCCGuCGCC-GcCGC------UGGGCCugCAGC- -5'
9015 3' -64 NC_002512.2 + 212572 0.66 0.692459
Target:  5'- gGGCGacgacGaCGGCGGCGACgaCGcGAUGUCc -3'
miRNA:   3'- gCCGU-----C-GCCGCCGCUGg-GC-CUGCAGc -5'
9015 3' -64 NC_002512.2 + 221430 0.66 0.692459
Target:  5'- aCGGCcgccauGCGGaCcGCGGCCgGGGCG-CGg -3'
miRNA:   3'- -GCCGu-----CGCC-GcCGCUGGgCCUGCaGC- -5'
9015 3' -64 NC_002512.2 + 77556 0.66 0.692459
Target:  5'- -cGCGGaCGGCGGguCGcCCaCGGGCGUCc -3'
miRNA:   3'- gcCGUC-GCCGCC--GCuGG-GCCUGCAGc -5'
9015 3' -64 NC_002512.2 + 221471 0.66 0.692459
Target:  5'- cCGGCcGCGGUGcGCGuuCCUGG-CGcUCGg -3'
miRNA:   3'- -GCCGuCGCCGC-CGCu-GGGCCuGC-AGC- -5'
9015 3' -64 NC_002512.2 + 25218 0.66 0.692459
Target:  5'- gCGGgAGCGaGCcgccGGCGAuccCCCGcGCGUCGc -3'
miRNA:   3'- -GCCgUCGC-CG----CCGCU---GGGCcUGCAGC- -5'
9015 3' -64 NC_002512.2 + 72803 0.66 0.692459
Target:  5'- gGGCccgccgugGGCGcCGGCGACCCcGGACccCGg -3'
miRNA:   3'- gCCG--------UCGCcGCCGCUGGG-CCUGcaGC- -5'
9015 3' -64 NC_002512.2 + 79067 0.66 0.692459
Target:  5'- gCGGC-GCGGUcgucacGGCGACCCGugaguGACGg-- -3'
miRNA:   3'- -GCCGuCGCCG------CCGCUGGGC-----CUGCagc -5'
9015 3' -64 NC_002512.2 + 81372 0.66 0.692459
Target:  5'- gGGCgGGCGGCGGCcGCCUccuCGUCc -3'
miRNA:   3'- gCCG-UCGCCGCCGcUGGGccuGCAGc -5'
9015 3' -64 NC_002512.2 + 123661 0.66 0.692459
Target:  5'- -cGCcGCGGCGGCcgGGCUCGGGgaagcggucCGUCGc -3'
miRNA:   3'- gcCGuCGCCGCCG--CUGGGCCU---------GCAGC- -5'
9015 3' -64 NC_002512.2 + 107083 0.66 0.692459
Target:  5'- uCGGgGGCGGUcgggucggucGGCGGCCCGuccuccuCGUCc -3'
miRNA:   3'- -GCCgUCGCCG----------CCGCUGGGCcu-----GCAGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.