Results 41 - 46 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9015 | 5' | -58 | NC_002512.2 | + | 89671 | 0.71 | 0.638809 |
Target: 5'- aCUCGACGUgCCUCggggaGAGCGGCaggCCg -3' miRNA: 3'- -GAGCUGCG-GGAGaua--CUCGCCGa--GGa -5' |
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9015 | 5' | -58 | NC_002512.2 | + | 34147 | 0.72 | 0.599438 |
Target: 5'- -cCGACGaCCUCg--GAGCGGUUCCc -3' miRNA: 3'- gaGCUGCgGGAGauaCUCGCCGAGGa -5' |
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9015 | 5' | -58 | NC_002512.2 | + | 9738 | 0.76 | 0.366159 |
Target: 5'- -aCGACGCCCUUgg-GGGCGGCggagCCg -3' miRNA: 3'- gaGCUGCGGGAGauaCUCGCCGa---GGa -5' |
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9015 | 5' | -58 | NC_002512.2 | + | 6808 | 0.77 | 0.358475 |
Target: 5'- uCUCGGucaacCGCCUUCUccGAGCGGCUCUUu -3' miRNA: 3'- -GAGCU-----GCGGGAGAuaCUCGCCGAGGA- -5' |
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9015 | 5' | -58 | NC_002512.2 | + | 200307 | 0.79 | 0.27522 |
Target: 5'- gCUCGucCGCCCUCgggGAGCGGCUUCc -3' miRNA: 3'- -GAGCu-GCGGGAGauaCUCGCCGAGGa -5' |
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9015 | 5' | -58 | NC_002512.2 | + | 170868 | 1.07 | 0.003973 |
Target: 5'- cCUCGACGCCCUCUAUGAGCGGCUCCUc -3' miRNA: 3'- -GAGCUGCGGGAGAUACUCGCCGAGGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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