miRNA display CGI


Results 41 - 46 of 46 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9015 5' -58 NC_002512.2 + 89671 0.71 0.638809
Target:  5'- aCUCGACGUgCCUCggggaGAGCGGCaggCCg -3'
miRNA:   3'- -GAGCUGCG-GGAGaua--CUCGCCGa--GGa -5'
9015 5' -58 NC_002512.2 + 34147 0.72 0.599438
Target:  5'- -cCGACGaCCUCg--GAGCGGUUCCc -3'
miRNA:   3'- gaGCUGCgGGAGauaCUCGCCGAGGa -5'
9015 5' -58 NC_002512.2 + 9738 0.76 0.366159
Target:  5'- -aCGACGCCCUUgg-GGGCGGCggagCCg -3'
miRNA:   3'- gaGCUGCGGGAGauaCUCGCCGa---GGa -5'
9015 5' -58 NC_002512.2 + 6808 0.77 0.358475
Target:  5'- uCUCGGucaacCGCCUUCUccGAGCGGCUCUUu -3'
miRNA:   3'- -GAGCU-----GCGGGAGAuaCUCGCCGAGGA- -5'
9015 5' -58 NC_002512.2 + 200307 0.79 0.27522
Target:  5'- gCUCGucCGCCCUCgggGAGCGGCUUCc -3'
miRNA:   3'- -GAGCu-GCGGGAGauaCUCGCCGAGGa -5'
9015 5' -58 NC_002512.2 + 170868 1.07 0.003973
Target:  5'- cCUCGACGCCCUCUAUGAGCGGCUCCUc -3'
miRNA:   3'- -GAGCUGCGGGAGAUACUCGCCGAGGA- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.