miRNA display CGI


Results 21 - 40 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9015 5' -58 NC_002512.2 + 126493 0.67 0.838143
Target:  5'- uUCGugGCCC-Cg--GAgcgcgagcgccucgGCGGCUCCg -3'
miRNA:   3'- gAGCugCGGGaGauaCU--------------CGCCGAGGa -5'
9015 5' -58 NC_002512.2 + 10960 0.68 0.832575
Target:  5'- -cCGGCGCCCUCgggccagGcAGCGGCacgagCCg -3'
miRNA:   3'- gaGCUGCGGGAGaua----C-UCGCCGa----GGa -5'
9015 5' -58 NC_002512.2 + 176513 0.68 0.832575
Target:  5'- cCUCGgucuccggaGCGUCCUCUAUGuGCggaGGCUCgCUc -3'
miRNA:   3'- -GAGC---------UGCGGGAGAUACuCG---CCGAG-GA- -5'
9015 5' -58 NC_002512.2 + 224991 0.68 0.832575
Target:  5'- -gCGGCGCCCUCUucccgucGCcGCUCCUc -3'
miRNA:   3'- gaGCUGCGGGAGAuacu---CGcCGAGGA- -5'
9015 5' -58 NC_002512.2 + 219415 0.68 0.832575
Target:  5'- -gCGACGCCCaCgcccgGGGCGGCggcggCCUc -3'
miRNA:   3'- gaGCUGCGGGaGaua--CUCGCCGa----GGA- -5'
9015 5' -58 NC_002512.2 + 199598 0.68 0.824477
Target:  5'- gUCGACGCgggggccuCCUCcAUGGcGcCGGCUCCg -3'
miRNA:   3'- gAGCUGCG--------GGAGaUACU-C-GCCGAGGa -5'
9015 5' -58 NC_002512.2 + 118065 0.68 0.824477
Target:  5'- gCUCGACuCCgCggaggGGGCGGCUCCg -3'
miRNA:   3'- -GAGCUGcGG-GagauaCUCGCCGAGGa -5'
9015 5' -58 NC_002512.2 + 140843 0.68 0.816217
Target:  5'- uUCGuCGCCCUCUgaaaGUGcGCGGC-CUg -3'
miRNA:   3'- gAGCuGCGGGAGA----UACuCGCCGaGGa -5'
9015 5' -58 NC_002512.2 + 108174 0.68 0.816217
Target:  5'- -cCGGCGCCUUCUGcggcguucaGGGCGGCcacgucUCCUa -3'
miRNA:   3'- gaGCUGCGGGAGAUa--------CUCGCCG------AGGA- -5'
9015 5' -58 NC_002512.2 + 137197 0.68 0.799239
Target:  5'- gUCGGucCGCCCg--GUGGGCGGCgcgCCc -3'
miRNA:   3'- gAGCU--GCGGGagaUACUCGCCGa--GGa -5'
9015 5' -58 NC_002512.2 + 97892 0.68 0.790536
Target:  5'- -cCGGCGCCCg----GGGCGGC-CCa -3'
miRNA:   3'- gaGCUGCGGGagauaCUCGCCGaGGa -5'
9015 5' -58 NC_002512.2 + 106682 0.69 0.781701
Target:  5'- -gCGACGUCCUC---GGGCaGCUCCUc -3'
miRNA:   3'- gaGCUGCGGGAGauaCUCGcCGAGGA- -5'
9015 5' -58 NC_002512.2 + 164451 0.69 0.754482
Target:  5'- gCUCGGCGCCCUCggcggGGGCGacgaccGC-CCg -3'
miRNA:   3'- -GAGCUGCGGGAGaua--CUCGC------CGaGGa -5'
9015 5' -58 NC_002512.2 + 211878 0.7 0.726363
Target:  5'- gUCGGCGCCCUg---GAGCGGgUCa- -3'
miRNA:   3'- gAGCUGCGGGAgauaCUCGCCgAGga -5'
9015 5' -58 NC_002512.2 + 207892 0.7 0.716828
Target:  5'- -cUGGCGCUCUCggc-GGUGGCUCCUc -3'
miRNA:   3'- gaGCUGCGGGAGauacUCGCCGAGGA- -5'
9015 5' -58 NC_002512.2 + 166197 0.7 0.716828
Target:  5'- -cCGugGCCUUCU-UGGGCGGCgaggagggCCg -3'
miRNA:   3'- gaGCugCGGGAGAuACUCGCCGa-------GGa -5'
9015 5' -58 NC_002512.2 + 97195 0.7 0.716828
Target:  5'- -aCGACGCCCgUCUGc-GGCGGCgggCCg -3'
miRNA:   3'- gaGCUGCGGG-AGAUacUCGCCGa--GGa -5'
9015 5' -58 NC_002512.2 + 132218 0.7 0.697565
Target:  5'- --gGACGCCC---AUGAGCaGCUCCUg -3'
miRNA:   3'- gagCUGCGGGagaUACUCGcCGAGGA- -5'
9015 5' -58 NC_002512.2 + 9351 0.71 0.66831
Target:  5'- -gUGACGCCCUCgcgcAGCaGCUCCUc -3'
miRNA:   3'- gaGCUGCGGGAGauacUCGcCGAGGA- -5'
9015 5' -58 NC_002512.2 + 116821 0.71 0.658494
Target:  5'- gUCGACcgccugGCCCUCgu---GCGGCUCCg -3'
miRNA:   3'- gAGCUG------CGGGAGauacuCGCCGAGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.