miRNA display CGI


Results 21 - 40 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9015 5' -58 NC_002512.2 + 219415 0.68 0.832575
Target:  5'- -gCGACGCCCaCgcccgGGGCGGCggcggCCUc -3'
miRNA:   3'- gaGCUGCGGGaGaua--CUCGCCGa----GGA- -5'
9015 5' -58 NC_002512.2 + 199598 0.68 0.824477
Target:  5'- gUCGACGCgggggccuCCUCcAUGGcGcCGGCUCCg -3'
miRNA:   3'- gAGCUGCG--------GGAGaUACU-C-GCCGAGGa -5'
9015 5' -58 NC_002512.2 + 140843 0.68 0.816217
Target:  5'- uUCGuCGCCCUCUgaaaGUGcGCGGC-CUg -3'
miRNA:   3'- gAGCuGCGGGAGA----UACuCGCCGaGGa -5'
9015 5' -58 NC_002512.2 + 108174 0.68 0.816217
Target:  5'- -cCGGCGCCUUCUGcggcguucaGGGCGGCcacgucUCCUa -3'
miRNA:   3'- gaGCUGCGGGAGAUa--------CUCGCCG------AGGA- -5'
9015 5' -58 NC_002512.2 + 106682 0.69 0.781701
Target:  5'- -gCGACGUCCUC---GGGCaGCUCCUc -3'
miRNA:   3'- gaGCUGCGGGAGauaCUCGcCGAGGA- -5'
9015 5' -58 NC_002512.2 + 164451 0.69 0.754482
Target:  5'- gCUCGGCGCCCUCggcggGGGCGacgaccGC-CCg -3'
miRNA:   3'- -GAGCUGCGGGAGaua--CUCGC------CGaGGa -5'
9015 5' -58 NC_002512.2 + 211878 0.7 0.726363
Target:  5'- gUCGGCGCCCUg---GAGCGGgUCa- -3'
miRNA:   3'- gAGCUGCGGGAgauaCUCGCCgAGga -5'
9015 5' -58 NC_002512.2 + 207892 0.7 0.716828
Target:  5'- -cUGGCGCUCUCggc-GGUGGCUCCUc -3'
miRNA:   3'- gaGCUGCGGGAGauacUCGCCGAGGA- -5'
9015 5' -58 NC_002512.2 + 166197 0.7 0.716828
Target:  5'- -cCGugGCCUUCU-UGGGCGGCgaggagggCCg -3'
miRNA:   3'- gaGCugCGGGAGAuACUCGCCGa-------GGa -5'
9015 5' -58 NC_002512.2 + 224991 0.68 0.832575
Target:  5'- -gCGGCGCCCUCUucccgucGCcGCUCCUc -3'
miRNA:   3'- gaGCUGCGGGAGAuacu---CGcCGAGGA- -5'
9015 5' -58 NC_002512.2 + 118594 0.67 0.840504
Target:  5'- aUCGGCgGCCCUCUccccGCGGCggCCg -3'
miRNA:   3'- gAGCUG-CGGGAGAuacuCGCCGa-GGa -5'
9015 5' -58 NC_002512.2 + 100345 0.67 0.848257
Target:  5'- gUCGACGCCCaaUAggGAGaCGGCguaggCCa -3'
miRNA:   3'- gAGCUGCGGGagAUa-CUC-GCCGa----GGa -5'
9015 5' -58 NC_002512.2 + 99631 0.66 0.914967
Target:  5'- gUCGuCGCCCUCg--GAG-GGC-CCg -3'
miRNA:   3'- gAGCuGCGGGAGauaCUCgCCGaGGa -5'
9015 5' -58 NC_002512.2 + 100614 0.66 0.914405
Target:  5'- gCUCGACGCacgacagCUUCUG-GAGCGGCa--- -3'
miRNA:   3'- -GAGCUGCG-------GGAGAUaCUCGCCGagga -5'
9015 5' -58 NC_002512.2 + 156270 0.66 0.909244
Target:  5'- -gCGGCGCCUucgacuUCUccGAGUGGC-CCg -3'
miRNA:   3'- gaGCUGCGGG------AGAuaCUCGCCGaGGa -5'
9015 5' -58 NC_002512.2 + 129988 0.66 0.884187
Target:  5'- -cCGGCGCCCUCgacGGGCcGCgCCUc -3'
miRNA:   3'- gaGCUGCGGGAGauaCUCGcCGaGGA- -5'
9015 5' -58 NC_002512.2 + 199287 0.67 0.870404
Target:  5'- aUCcGCGCCCUCcgGUuGGUGGcCUCCUc -3'
miRNA:   3'- gAGcUGCGGGAGa-UAcUCGCC-GAGGA- -5'
9015 5' -58 NC_002512.2 + 95649 0.67 0.870404
Target:  5'- gCUCGGcCGCCCccggcacagccUCUcGUGAGCGcGCgUCCg -3'
miRNA:   3'- -GAGCU-GCGGG-----------AGA-UACUCGC-CG-AGGa -5'
9015 5' -58 NC_002512.2 + 158013 0.67 0.863213
Target:  5'- uUCGACGCCCUg---GucCGGUUCCUc -3'
miRNA:   3'- gAGCUGCGGGAgauaCucGCCGAGGA- -5'
9015 5' -58 NC_002512.2 + 641 0.67 0.863213
Target:  5'- cCUCcuACGCCCUCggUGUGGGUguugGGCUCUc -3'
miRNA:   3'- -GAGc-UGCGGGAG--AUACUCG----CCGAGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.