miRNA display CGI


Results 21 - 40 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9015 5' -58 NC_002512.2 + 199598 0.68 0.824477
Target:  5'- gUCGACGCgggggccuCCUCcAUGGcGcCGGCUCCg -3'
miRNA:   3'- gAGCUGCG--------GGAGaUACU-C-GCCGAGGa -5'
9015 5' -58 NC_002512.2 + 10960 0.68 0.832575
Target:  5'- -cCGGCGCCCUCgggccagGcAGCGGCacgagCCg -3'
miRNA:   3'- gaGCUGCGGGAGaua----C-UCGCCGa----GGa -5'
9015 5' -58 NC_002512.2 + 176513 0.68 0.832575
Target:  5'- cCUCGgucuccggaGCGUCCUCUAUGuGCggaGGCUCgCUc -3'
miRNA:   3'- -GAGC---------UGCGGGAGAUACuCG---CCGAG-GA- -5'
9015 5' -58 NC_002512.2 + 224991 0.68 0.832575
Target:  5'- -gCGGCGCCCUCUucccgucGCcGCUCCUc -3'
miRNA:   3'- gaGCUGCGGGAGAuacu---CGcCGAGGA- -5'
9015 5' -58 NC_002512.2 + 219415 0.68 0.832575
Target:  5'- -gCGACGCCCaCgcccgGGGCGGCggcggCCUc -3'
miRNA:   3'- gaGCUGCGGGaGaua--CUCGCCGa----GGA- -5'
9015 5' -58 NC_002512.2 + 126493 0.67 0.838143
Target:  5'- uUCGugGCCC-Cg--GAgcgcgagcgccucgGCGGCUCCg -3'
miRNA:   3'- gAGCugCGGGaGauaCU--------------CGCCGAGGa -5'
9015 5' -58 NC_002512.2 + 118594 0.67 0.840504
Target:  5'- aUCGGCgGCCCUCUccccGCGGCggCCg -3'
miRNA:   3'- gAGCUG-CGGGAGAuacuCGCCGa-GGa -5'
9015 5' -58 NC_002512.2 + 58373 0.67 0.848257
Target:  5'- gCUCGACGUCCUCgaggGUGA-CGGC-Ca- -3'
miRNA:   3'- -GAGCUGCGGGAGa---UACUcGCCGaGga -5'
9015 5' -58 NC_002512.2 + 100345 0.67 0.848257
Target:  5'- gUCGACGCCCaaUAggGAGaCGGCguaggCCa -3'
miRNA:   3'- gAGCUGCGGGagAUa-CUC-GCCGa----GGa -5'
9015 5' -58 NC_002512.2 + 102306 0.67 0.855829
Target:  5'- -aCGACGCCUacaUCgccGAGCGGCUgggCCg -3'
miRNA:   3'- gaGCUGCGGG---AGauaCUCGCCGA---GGa -5'
9015 5' -58 NC_002512.2 + 94777 0.67 0.855829
Target:  5'- gUCG-CGCCgUCcg-GAGCaGCUCCUg -3'
miRNA:   3'- gAGCuGCGGgAGauaCUCGcCGAGGA- -5'
9015 5' -58 NC_002512.2 + 641 0.67 0.863213
Target:  5'- cCUCcuACGCCCUCggUGUGGGUguugGGCUCUc -3'
miRNA:   3'- -GAGc-UGCGGGAG--AUACUCG----CCGAGGa -5'
9015 5' -58 NC_002512.2 + 158013 0.67 0.863213
Target:  5'- uUCGACGCCCUg---GucCGGUUCCUc -3'
miRNA:   3'- gAGCUGCGGGAgauaCucGCCGAGGA- -5'
9015 5' -58 NC_002512.2 + 140070 0.67 0.869694
Target:  5'- uCUCGACGUCCUCUcgGcGCucaucGGCgaccccgUCCUg -3'
miRNA:   3'- -GAGCUGCGGGAGAuaCuCG-----CCG-------AGGA- -5'
9015 5' -58 NC_002512.2 + 199287 0.67 0.870404
Target:  5'- aUCcGCGCCCUCcgGUuGGUGGcCUCCUc -3'
miRNA:   3'- gAGcUGCGGGAGa-UAcUCGCC-GAGGA- -5'
9015 5' -58 NC_002512.2 + 95649 0.67 0.870404
Target:  5'- gCUCGGcCGCCCccggcacagccUCUcGUGAGCGcGCgUCCg -3'
miRNA:   3'- -GAGCU-GCGGG-----------AGA-UACUCGC-CG-AGGa -5'
9015 5' -58 NC_002512.2 + 129988 0.66 0.884187
Target:  5'- -cCGGCGCCCUCgacGGGCcGCgCCUc -3'
miRNA:   3'- gaGCUGCGGGAGauaCUCGcCGaGGA- -5'
9015 5' -58 NC_002512.2 + 127491 0.66 0.884187
Target:  5'- -cCGcCGCCCUCgggcggGAGCauccccucguccGGCUCCa -3'
miRNA:   3'- gaGCuGCGGGAGaua---CUCG------------CCGAGGa -5'
9015 5' -58 NC_002512.2 + 13637 0.66 0.890122
Target:  5'- -gCGGCGCaCCUg-AUGAcgaccgucucgccGCGGCUCCa -3'
miRNA:   3'- gaGCUGCG-GGAgaUACU-------------CGCCGAGGa -5'
9015 5' -58 NC_002512.2 + 106301 0.66 0.899632
Target:  5'- -gCGGCGUCCUCUcaGAcccgcagcgccuucgGCGGCUCUc -3'
miRNA:   3'- gaGCUGCGGGAGAuaCU---------------CGCCGAGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.