Results 1 - 20 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9015 | 5' | -58 | NC_002512.2 | + | 170868 | 1.07 | 0.003973 |
Target: 5'- cCUCGACGCCCUCUAUGAGCGGCUCCUc -3' miRNA: 3'- -GAGCUGCGGGAGAUACUCGCCGAGGA- -5' |
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9015 | 5' | -58 | NC_002512.2 | + | 200307 | 0.79 | 0.27522 |
Target: 5'- gCUCGucCGCCCUCgggGAGCGGCUUCc -3' miRNA: 3'- -GAGCu-GCGGGAGauaCUCGCCGAGGa -5' |
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9015 | 5' | -58 | NC_002512.2 | + | 6808 | 0.77 | 0.358475 |
Target: 5'- uCUCGGucaacCGCCUUCUccGAGCGGCUCUUu -3' miRNA: 3'- -GAGCU-----GCGGGAGAuaCUCGCCGAGGA- -5' |
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9015 | 5' | -58 | NC_002512.2 | + | 9738 | 0.76 | 0.366159 |
Target: 5'- -aCGACGCCCUUgg-GGGCGGCggagCCg -3' miRNA: 3'- gaGCUGCGGGAGauaCUCGCCGa---GGa -5' |
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9015 | 5' | -58 | NC_002512.2 | + | 34147 | 0.72 | 0.599438 |
Target: 5'- -cCGACGaCCUCg--GAGCGGUUCCc -3' miRNA: 3'- gaGCUGCgGGAGauaCUCGCCGAGGa -5' |
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9015 | 5' | -58 | NC_002512.2 | + | 89671 | 0.71 | 0.638809 |
Target: 5'- aCUCGACGUgCCUCggggaGAGCGGCaggCCg -3' miRNA: 3'- -GAGCUGCG-GGAGaua--CUCGCCGa--GGa -5' |
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9015 | 5' | -58 | NC_002512.2 | + | 116821 | 0.71 | 0.658494 |
Target: 5'- gUCGACcgccugGCCCUCgu---GCGGCUCCg -3' miRNA: 3'- gAGCUG------CGGGAGauacuCGCCGAGGa -5' |
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9015 | 5' | -58 | NC_002512.2 | + | 9351 | 0.71 | 0.66831 |
Target: 5'- -gUGACGCCCUCgcgcAGCaGCUCCUc -3' miRNA: 3'- gaGCUGCGGGAGauacUCGcCGAGGA- -5' |
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9015 | 5' | -58 | NC_002512.2 | + | 132218 | 0.7 | 0.697565 |
Target: 5'- --gGACGCCC---AUGAGCaGCUCCUg -3' miRNA: 3'- gagCUGCGGGagaUACUCGcCGAGGA- -5' |
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9015 | 5' | -58 | NC_002512.2 | + | 166197 | 0.7 | 0.716828 |
Target: 5'- -cCGugGCCUUCU-UGGGCGGCgaggagggCCg -3' miRNA: 3'- gaGCugCGGGAGAuACUCGCCGa-------GGa -5' |
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9015 | 5' | -58 | NC_002512.2 | + | 97195 | 0.7 | 0.716828 |
Target: 5'- -aCGACGCCCgUCUGc-GGCGGCgggCCg -3' miRNA: 3'- gaGCUGCGGG-AGAUacUCGCCGa--GGa -5' |
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9015 | 5' | -58 | NC_002512.2 | + | 207892 | 0.7 | 0.716828 |
Target: 5'- -cUGGCGCUCUCggc-GGUGGCUCCUc -3' miRNA: 3'- gaGCUGCGGGAGauacUCGCCGAGGA- -5' |
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9015 | 5' | -58 | NC_002512.2 | + | 211878 | 0.7 | 0.726363 |
Target: 5'- gUCGGCGCCCUg---GAGCGGgUCa- -3' miRNA: 3'- gAGCUGCGGGAgauaCUCGCCgAGga -5' |
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9015 | 5' | -58 | NC_002512.2 | + | 164451 | 0.69 | 0.754482 |
Target: 5'- gCUCGGCGCCCUCggcggGGGCGacgaccGC-CCg -3' miRNA: 3'- -GAGCUGCGGGAGaua--CUCGC------CGaGGa -5' |
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9015 | 5' | -58 | NC_002512.2 | + | 106682 | 0.69 | 0.781701 |
Target: 5'- -gCGACGUCCUC---GGGCaGCUCCUc -3' miRNA: 3'- gaGCUGCGGGAGauaCUCGcCGAGGA- -5' |
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9015 | 5' | -58 | NC_002512.2 | + | 97892 | 0.68 | 0.790536 |
Target: 5'- -cCGGCGCCCg----GGGCGGC-CCa -3' miRNA: 3'- gaGCUGCGGGagauaCUCGCCGaGGa -5' |
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9015 | 5' | -58 | NC_002512.2 | + | 137197 | 0.68 | 0.799239 |
Target: 5'- gUCGGucCGCCCg--GUGGGCGGCgcgCCc -3' miRNA: 3'- gAGCU--GCGGGagaUACUCGCCGa--GGa -5' |
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9015 | 5' | -58 | NC_002512.2 | + | 108174 | 0.68 | 0.816217 |
Target: 5'- -cCGGCGCCUUCUGcggcguucaGGGCGGCcacgucUCCUa -3' miRNA: 3'- gaGCUGCGGGAGAUa--------CUCGCCG------AGGA- -5' |
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9015 | 5' | -58 | NC_002512.2 | + | 140843 | 0.68 | 0.816217 |
Target: 5'- uUCGuCGCCCUCUgaaaGUGcGCGGC-CUg -3' miRNA: 3'- gAGCuGCGGGAGA----UACuCGCCGaGGa -5' |
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9015 | 5' | -58 | NC_002512.2 | + | 199598 | 0.68 | 0.824477 |
Target: 5'- gUCGACGCgggggccuCCUCcAUGGcGcCGGCUCCg -3' miRNA: 3'- gAGCUGCG--------GGAGaUACU-C-GCCGAGGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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