miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9015 5' -58 NC_002512.2 + 9738 0.76 0.366159
Target:  5'- -aCGACGCCCUUgg-GGGCGGCggagCCg -3'
miRNA:   3'- gaGCUGCGGGAGauaCUCGCCGa---GGa -5'
9015 5' -58 NC_002512.2 + 102306 0.67 0.855829
Target:  5'- -aCGACGCCUacaUCgccGAGCGGCUgggCCg -3'
miRNA:   3'- gaGCUGCGGG---AGauaCUCGCCGA---GGa -5'
9015 5' -58 NC_002512.2 + 94777 0.67 0.855829
Target:  5'- gUCG-CGCCgUCcg-GAGCaGCUCCUg -3'
miRNA:   3'- gAGCuGCGGgAGauaCUCGcCGAGGA- -5'
9015 5' -58 NC_002512.2 + 140070 0.67 0.869694
Target:  5'- uCUCGACGUCCUCUcgGcGCucaucGGCgaccccgUCCUg -3'
miRNA:   3'- -GAGCUGCGGGAGAuaCuCG-----CCG-------AGGA- -5'
9015 5' -58 NC_002512.2 + 127491 0.66 0.884187
Target:  5'- -cCGcCGCCCUCgggcggGAGCauccccucguccGGCUCCa -3'
miRNA:   3'- gaGCuGCGGGAGaua---CUCG------------CCGAGGa -5'
9015 5' -58 NC_002512.2 + 13637 0.66 0.890122
Target:  5'- -gCGGCGCaCCUg-AUGAcgaccgucucgccGCGGCUCCa -3'
miRNA:   3'- gaGCUGCG-GGAgaUACU-------------CGCCGAGGa -5'
9015 5' -58 NC_002512.2 + 106301 0.66 0.899632
Target:  5'- -gCGGCGUCCUCUcaGAcccgcagcgccuucgGCGGCUCUc -3'
miRNA:   3'- gaGCUGCGGGAGAuaCU---------------CGCCGAGGa -5'
9015 5' -58 NC_002512.2 + 7234 0.66 0.902695
Target:  5'- cCUCGGCccggccgGCCgUCgcggcgGAGCGGCgUCCg -3'
miRNA:   3'- -GAGCUG-------CGGgAGaua---CUCGCCG-AGGa -5'
9015 5' -58 NC_002512.2 + 43228 0.66 0.909244
Target:  5'- -aCGACGUCCUCccgGAGCugGGC-CCa -3'
miRNA:   3'- gaGCUGCGGGAGauaCUCG--CCGaGGa -5'
9015 5' -58 NC_002512.2 + 58373 0.67 0.848257
Target:  5'- gCUCGACGUCCUCgaggGUGA-CGGC-Ca- -3'
miRNA:   3'- -GAGCUGCGGGAGa---UACUcGCCGaGga -5'
9015 5' -58 NC_002512.2 + 126493 0.67 0.838143
Target:  5'- uUCGugGCCC-Cg--GAgcgcgagcgccucgGCGGCUCCg -3'
miRNA:   3'- gAGCugCGGGaGauaCU--------------CGCCGAGGa -5'
9015 5' -58 NC_002512.2 + 176513 0.68 0.832575
Target:  5'- cCUCGgucuccggaGCGUCCUCUAUGuGCggaGGCUCgCUc -3'
miRNA:   3'- -GAGC---------UGCGGGAGAUACuCG---CCGAG-GA- -5'
9015 5' -58 NC_002512.2 + 34147 0.72 0.599438
Target:  5'- -cCGACGaCCUCg--GAGCGGUUCCc -3'
miRNA:   3'- gaGCUGCgGGAGauaCUCGCCGAGGa -5'
9015 5' -58 NC_002512.2 + 116821 0.71 0.658494
Target:  5'- gUCGACcgccugGCCCUCgu---GCGGCUCCg -3'
miRNA:   3'- gAGCUG------CGGGAGauacuCGCCGAGGa -5'
9015 5' -58 NC_002512.2 + 9351 0.71 0.66831
Target:  5'- -gUGACGCCCUCgcgcAGCaGCUCCUc -3'
miRNA:   3'- gaGCUGCGGGAGauacUCGcCGAGGA- -5'
9015 5' -58 NC_002512.2 + 97195 0.7 0.716828
Target:  5'- -aCGACGCCCgUCUGc-GGCGGCgggCCg -3'
miRNA:   3'- gaGCUGCGGG-AGAUacUCGCCGa--GGa -5'
9015 5' -58 NC_002512.2 + 97892 0.68 0.790536
Target:  5'- -cCGGCGCCCg----GGGCGGC-CCa -3'
miRNA:   3'- gaGCUGCGGGagauaCUCGCCGaGGa -5'
9015 5' -58 NC_002512.2 + 137197 0.68 0.799239
Target:  5'- gUCGGucCGCCCg--GUGGGCGGCgcgCCc -3'
miRNA:   3'- gAGCU--GCGGGagaUACUCGCCGa--GGa -5'
9015 5' -58 NC_002512.2 + 118065 0.68 0.824477
Target:  5'- gCUCGACuCCgCggaggGGGCGGCUCCg -3'
miRNA:   3'- -GAGCUGcGG-GagauaCUCGCCGAGGa -5'
9015 5' -58 NC_002512.2 + 10960 0.68 0.832575
Target:  5'- -cCGGCGCCCUCgggccagGcAGCGGCacgagCCg -3'
miRNA:   3'- gaGCUGCGGGAGaua----C-UCGCCGa----GGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.