miRNA display CGI


Results 21 - 40 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9016 5' -56.3 NC_002512.2 + 78645 0.66 0.9648
Target:  5'- aCCGAgaugauggcGUCgGUCGAGC-CGGCGcCGg -3'
miRNA:   3'- gGGCU---------CAGgCAGCUCGuGCUGCaGUg -5'
9016 5' -56.3 NC_002512.2 + 155247 0.66 0.9648
Target:  5'- uCCCGc--CCGUCGcGGCGuCGACGgcUCGCg -3'
miRNA:   3'- -GGGCucaGGCAGC-UCGU-GCUGC--AGUG- -5'
9016 5' -56.3 NC_002512.2 + 83648 0.66 0.9648
Target:  5'- uCCCG-GUCgaGgcaGAGCGCGugGUC-Ca -3'
miRNA:   3'- -GGGCuCAGg-Cag-CUCGUGCugCAGuG- -5'
9016 5' -56.3 NC_002512.2 + 100345 0.66 0.9648
Target:  5'- -gCGGGcgCCGgccaCGcAGCACGGCGUCGu -3'
miRNA:   3'- ggGCUCa-GGCa---GC-UCGUGCUGCAGUg -5'
9016 5' -56.3 NC_002512.2 + 141897 0.66 0.964487
Target:  5'- uCUCGGGUUccaucgcggacaCGUUGAuccacucGUACGGCGUCACc -3'
miRNA:   3'- -GGGCUCAG------------GCAGCU-------CGUGCUGCAGUG- -5'
9016 5' -56.3 NC_002512.2 + 55732 0.66 0.964487
Target:  5'- cCCCGGGaCgcggugaccacggUGUCGAGCGaguCGGCGUCGu -3'
miRNA:   3'- -GGGCUCaG-------------GCAGCUCGU---GCUGCAGUg -5'
9016 5' -56.3 NC_002512.2 + 17682 0.66 0.96158
Target:  5'- gCCGAcgaucUCCucGUCGAGCAgcgUGACGUUGCg -3'
miRNA:   3'- gGGCUc----AGG--CAGCUCGU---GCUGCAGUG- -5'
9016 5' -56.3 NC_002512.2 + 138049 0.66 0.96158
Target:  5'- gCCGGGaCUgGUCGAcGgACGGCGUCAg -3'
miRNA:   3'- gGGCUCaGG-CAGCU-CgUGCUGCAGUg -5'
9016 5' -56.3 NC_002512.2 + 106666 0.66 0.96158
Target:  5'- cUCCGAGauguagCGUCG-GUACG-CGUCGCg -3'
miRNA:   3'- -GGGCUCag----GCAGCuCGUGCuGCAGUG- -5'
9016 5' -56.3 NC_002512.2 + 126653 0.66 0.96158
Target:  5'- gCCGcGG-CCGUCGAcGgGCGGCGaCGCg -3'
miRNA:   3'- gGGC-UCaGGCAGCU-CgUGCUGCaGUG- -5'
9016 5' -56.3 NC_002512.2 + 112885 0.66 0.958161
Target:  5'- gCCCGGcGUucUCGUCGGuCGCcGCGUCGCg -3'
miRNA:   3'- -GGGCU-CA--GGCAGCUcGUGcUGCAGUG- -5'
9016 5' -56.3 NC_002512.2 + 24899 0.66 0.958161
Target:  5'- cCCCGccuuccGGUccCCGUCGccCGCGGCGUCGg -3'
miRNA:   3'- -GGGC------UCA--GGCAGCucGUGCUGCAGUg -5'
9016 5' -56.3 NC_002512.2 + 86165 0.66 0.958161
Target:  5'- cUCCGAGgcccugCUGcggGAGCugGAgGUCGCg -3'
miRNA:   3'- -GGGCUCa-----GGCag-CUCGugCUgCAGUG- -5'
9016 5' -56.3 NC_002512.2 + 83797 0.66 0.958161
Target:  5'- gCCGAGgacCgCGUCGGGCGCGcCGgcgGCg -3'
miRNA:   3'- gGGCUCa--G-GCAGCUCGUGCuGCag-UG- -5'
9016 5' -56.3 NC_002512.2 + 98307 0.66 0.958161
Target:  5'- gUCCGAGgugUCGgUGAGCACGcugaaGUCGCu -3'
miRNA:   3'- -GGGCUCa--GGCaGCUCGUGCug---CAGUG- -5'
9016 5' -56.3 NC_002512.2 + 180443 0.66 0.958161
Target:  5'- cCCCGGGcggcgcCCGUCauuucucgacGGCuCGGCGUCGCg -3'
miRNA:   3'- -GGGCUCa-----GGCAGc---------UCGuGCUGCAGUG- -5'
9016 5' -56.3 NC_002512.2 + 189219 0.66 0.958161
Target:  5'- gCUCGAcgucggauccGUCCGUCGccgucGCG-GACGUCACc -3'
miRNA:   3'- -GGGCU----------CAGGCAGCu----CGUgCUGCAGUG- -5'
9016 5' -56.3 NC_002512.2 + 191889 0.66 0.958161
Target:  5'- cCCCGAGcggCCGUCcauucacauggGAGCGCGcuaugauCGUgACg -3'
miRNA:   3'- -GGGCUCa--GGCAG-----------CUCGUGCu------GCAgUG- -5'
9016 5' -56.3 NC_002512.2 + 221811 0.66 0.958161
Target:  5'- -aCGAGUUCGagGAGCucgucuCGGCGUC-Cg -3'
miRNA:   3'- ggGCUCAGGCagCUCGu-----GCUGCAGuG- -5'
9016 5' -56.3 NC_002512.2 + 222218 0.66 0.954539
Target:  5'- gUCGGGguggCCGUCGGGgcCGCGuccuuCGUCGCc -3'
miRNA:   3'- gGGCUCa---GGCAGCUC--GUGCu----GCAGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.