miRNA display CGI


Results 21 - 40 of 184 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9016 5' -56.3 NC_002512.2 + 167162 0.73 0.666918
Target:  5'- cCCgCGAGgCCGUCGAcCGCGACG-CGCu -3'
miRNA:   3'- -GG-GCUCaGGCAGCUcGUGCUGCaGUG- -5'
9016 5' -56.3 NC_002512.2 + 95566 0.73 0.67661
Target:  5'- -gCGAGUCCGUCGGcGCcggccccgGCGACGUCc- -3'
miRNA:   3'- ggGCUCAGGCAGCU-CG--------UGCUGCAGug -5'
9016 5' -56.3 NC_002512.2 + 19951 0.73 0.67661
Target:  5'- gUCGAGcagCCGaagaccUCGAGCAUGACGUUGCa -3'
miRNA:   3'- gGGCUCa--GGC------AGCUCGUGCUGCAGUG- -5'
9016 5' -56.3 NC_002512.2 + 132155 0.73 0.695887
Target:  5'- cCUCGAGgUCGgUGAGCGCGGCGUCGu -3'
miRNA:   3'- -GGGCUCaGGCaGCUCGUGCUGCAGUg -5'
9016 5' -56.3 NC_002512.2 + 114683 0.73 0.695887
Target:  5'- aCCGAGUCCGUC-AGCGCGuccaGguagCGCg -3'
miRNA:   3'- gGGCUCAGGCAGcUCGUGCug--Ca---GUG- -5'
9016 5' -56.3 NC_002512.2 + 18451 0.73 0.695887
Target:  5'- gCCCGAGcUCCGggcaGAagggcaGCGCGACGUCGu -3'
miRNA:   3'- -GGGCUC-AGGCag--CU------CGUGCUGCAGUg -5'
9016 5' -56.3 NC_002512.2 + 130473 0.73 0.705456
Target:  5'- uCCUGGGUCgGUCgGGGCcCGAucCGUCGCa -3'
miRNA:   3'- -GGGCUCAGgCAG-CUCGuGCU--GCAGUG- -5'
9016 5' -56.3 NC_002512.2 + 124640 0.73 0.71497
Target:  5'- aUCCGGGUgCG-CG-GCGCGGCGcUCACg -3'
miRNA:   3'- -GGGCUCAgGCaGCuCGUGCUGC-AGUG- -5'
9016 5' -56.3 NC_002512.2 + 220756 0.72 0.733796
Target:  5'- gCUGGG-CCGUCGAgGC-CGACGUCGg -3'
miRNA:   3'- gGGCUCaGGCAGCU-CGuGCUGCAGUg -5'
9016 5' -56.3 NC_002512.2 + 155256 0.72 0.733796
Target:  5'- cCCCGGG-CCGUC--GCGCGGCGgucUCGCg -3'
miRNA:   3'- -GGGCUCaGGCAGcuCGUGCUGC---AGUG- -5'
9016 5' -56.3 NC_002512.2 + 108970 0.72 0.733796
Target:  5'- gCCCGGGUCCGUC-AGCAgGGcCGUgUACc -3'
miRNA:   3'- -GGGCUCAGGCAGcUCGUgCU-GCA-GUG- -5'
9016 5' -56.3 NC_002512.2 + 194235 0.72 0.761416
Target:  5'- gCCGGuGUCguCGUCGAGCAUGAUGauauUCGCg -3'
miRNA:   3'- gGGCU-CAG--GCAGCUCGUGCUGC----AGUG- -5'
9016 5' -56.3 NC_002512.2 + 137655 0.71 0.779322
Target:  5'- gUCCGAGUCCcggucGUCGGGCACGAac-UGCg -3'
miRNA:   3'- -GGGCUCAGG-----CAGCUCGUGCUgcaGUG- -5'
9016 5' -56.3 NC_002512.2 + 60359 0.71 0.779322
Target:  5'- gCCGGGacCCGuUCGAGCugGACGcgUACa -3'
miRNA:   3'- gGGCUCa-GGC-AGCUCGugCUGCa-GUG- -5'
9016 5' -56.3 NC_002512.2 + 189542 0.71 0.779322
Target:  5'- cCCCGAGgggaaucaaUUCGacaucgCGAGCgacgGCGACGUCGCa -3'
miRNA:   3'- -GGGCUC---------AGGCa-----GCUCG----UGCUGCAGUG- -5'
9016 5' -56.3 NC_002512.2 + 85383 0.71 0.788099
Target:  5'- aCCGAGUCCGggcAGCGCaGCGUCuGCa -3'
miRNA:   3'- gGGCUCAGGCagcUCGUGcUGCAG-UG- -5'
9016 5' -56.3 NC_002512.2 + 124748 0.71 0.796749
Target:  5'- -aCGcGUCCGUCGGGUGCGGCGaCGa -3'
miRNA:   3'- ggGCuCAGGCAGCUCGUGCUGCaGUg -5'
9016 5' -56.3 NC_002512.2 + 128502 0.71 0.796749
Target:  5'- aCCaCGAGcUCCGaCGAGCACGucauCGUCu- -3'
miRNA:   3'- -GG-GCUC-AGGCaGCUCGUGCu---GCAGug -5'
9016 5' -56.3 NC_002512.2 + 75083 0.71 0.796749
Target:  5'- gUCGAGgcgCCGUUucggGGGCuCGACGUCGCc -3'
miRNA:   3'- gGGCUCa--GGCAG----CUCGuGCUGCAGUG- -5'
9016 5' -56.3 NC_002512.2 + 49432 0.71 0.805264
Target:  5'- gCCGAG-CCGUCGAGaaAUGACGggCGCc -3'
miRNA:   3'- gGGCUCaGGCAGCUCg-UGCUGCa-GUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.