miRNA display CGI


Results 1 - 20 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9016 5' -56.3 NC_002512.2 + 170599 1.12 0.003307
Target:  5'- aCCCGAGUCCGUCGAGCACGACGUCACg -3'
miRNA:   3'- -GGGCUCAGGCAGCUCGUGCUGCAGUG- -5'
9016 5' -56.3 NC_002512.2 + 207945 0.79 0.360094
Target:  5'- gCUCGGGUCCGUCcucucGGCACGuCGUCGCc -3'
miRNA:   3'- -GGGCUCAGGCAGc----UCGUGCuGCAGUG- -5'
9016 5' -56.3 NC_002512.2 + 150670 0.79 0.399324
Target:  5'- cCUCGAgGUCCG-CGGGCGCGGCgGUCGCc -3'
miRNA:   3'- -GGGCU-CAGGCaGCUCGUGCUG-CAGUG- -5'
9016 5' -56.3 NC_002512.2 + 213910 0.77 0.449848
Target:  5'- cCCCGGGggagaucgaCCGcggCGAGUGCGACGUCGCc -3'
miRNA:   3'- -GGGCUCa--------GGCa--GCUCGUGCUGCAGUG- -5'
9016 5' -56.3 NC_002512.2 + 227655 0.77 0.467458
Target:  5'- gCCCGGGUCCGgaggaaGAGCGgCGGCGcCGCc -3'
miRNA:   3'- -GGGCUCAGGCag----CUCGU-GCUGCaGUG- -5'
9016 5' -56.3 NC_002512.2 + 123541 0.77 0.476395
Target:  5'- cUCCGAGUCgG-CGGGCGCGgACGUCGa -3'
miRNA:   3'- -GGGCUCAGgCaGCUCGUGC-UGCAGUg -5'
9016 5' -56.3 NC_002512.2 + 110822 0.76 0.512948
Target:  5'- cCCCGAGUCCGUacaGGCA-GACGUgCGCg -3'
miRNA:   3'- -GGGCUCAGGCAgc-UCGUgCUGCA-GUG- -5'
9016 5' -56.3 NC_002512.2 + 25176 0.76 0.531655
Target:  5'- cCCCGGGcCCGcCGucGC-CGACGUCGCg -3'
miRNA:   3'- -GGGCUCaGGCaGCu-CGuGCUGCAGUG- -5'
9016 5' -56.3 NC_002512.2 + 1749 0.75 0.569751
Target:  5'- aCCUGAGcucgcgcCCGUCGgcgcccAGCACGACGUUGCg -3'
miRNA:   3'- -GGGCUCa------GGCAGC------UCGUGCUGCAGUG- -5'
9016 5' -56.3 NC_002512.2 + 27686 0.75 0.569751
Target:  5'- cCCgCGGGUCCGUCGGcgauccggaacGCGCGuucuccCGUCACg -3'
miRNA:   3'- -GG-GCUCAGGCAGCU-----------CGUGCu-----GCAGUG- -5'
9016 5' -56.3 NC_002512.2 + 179188 0.74 0.608482
Target:  5'- gCCGGGUCC-UCGGGC-CGguccaGCGUCACg -3'
miRNA:   3'- gGGCUCAGGcAGCUCGuGC-----UGCAGUG- -5'
9016 5' -56.3 NC_002512.2 + 100296 0.74 0.61822
Target:  5'- -gCGAGUUCGUCGGGgGCGACGggGCc -3'
miRNA:   3'- ggGCUCAGGCAGCUCgUGCUGCagUG- -5'
9016 5' -56.3 NC_002512.2 + 91867 0.74 0.627968
Target:  5'- cCCCGAGgccgCCGUCcGGCGCgGGCGgcggCGCg -3'
miRNA:   3'- -GGGCUCa---GGCAGcUCGUG-CUGCa---GUG- -5'
9016 5' -56.3 NC_002512.2 + 9680 0.74 0.627968
Target:  5'- cCCCGGGccgCCGUCGGGCccCGGCGgggguUCGCg -3'
miRNA:   3'- -GGGCUCa--GGCAGCUCGu-GCUGC-----AGUG- -5'
9016 5' -56.3 NC_002512.2 + 82191 0.74 0.637718
Target:  5'- gCCCGuccgCCGUCGGGC-CGGCGUCc- -3'
miRNA:   3'- -GGGCuca-GGCAGCUCGuGCUGCAGug -5'
9016 5' -56.3 NC_002512.2 + 80660 0.74 0.647465
Target:  5'- gCCGGGUCCGUCGGuccCGCGGCGgcgGCg -3'
miRNA:   3'- gGGCUCAGGCAGCUc--GUGCUGCag-UG- -5'
9016 5' -56.3 NC_002512.2 + 167162 0.73 0.666918
Target:  5'- cCCgCGAGgCCGUCGAcCGCGACG-CGCu -3'
miRNA:   3'- -GG-GCUCaGGCAGCUcGUGCUGCaGUG- -5'
9016 5' -56.3 NC_002512.2 + 140222 0.73 0.666918
Target:  5'- cCCCGAGgcaCGUCGAGUACGuCGacCGCu -3'
miRNA:   3'- -GGGCUCag-GCAGCUCGUGCuGCa-GUG- -5'
9016 5' -56.3 NC_002512.2 + 118202 0.73 0.666918
Target:  5'- cCCCGAGgCCGUCuGGUGCGACGggGCc -3'
miRNA:   3'- -GGGCUCaGGCAGcUCGUGCUGCagUG- -5'
9016 5' -56.3 NC_002512.2 + 154777 0.73 0.666918
Target:  5'- cCCCGuGUCCGcCaGGCgGCGACGUCGa -3'
miRNA:   3'- -GGGCuCAGGCaGcUCG-UGCUGCAGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.