miRNA display CGI


Results 1 - 20 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9016 5' -56.3 NC_002512.2 + 1749 0.75 0.569751
Target:  5'- aCCUGAGcucgcgcCCGUCGgcgcccAGCACGACGUUGCg -3'
miRNA:   3'- -GGGCUCa------GGCAGC------UCGUGCUGCAGUG- -5'
9016 5' -56.3 NC_002512.2 + 5276 0.71 0.805264
Target:  5'- cCCCGAGcCCgGUCG-GCACcGCGUCccGCg -3'
miRNA:   3'- -GGGCUCaGG-CAGCuCGUGcUGCAG--UG- -5'
9016 5' -56.3 NC_002512.2 + 7239 0.68 0.928384
Target:  5'- gCCCGGccggCCGUCGcGGCggaGCGGCGUC-Cg -3'
miRNA:   3'- -GGGCUca--GGCAGC-UCG---UGCUGCAGuG- -5'
9016 5' -56.3 NC_002512.2 + 9680 0.74 0.627968
Target:  5'- cCCCGGGccgCCGUCGGGCccCGGCGgggguUCGCg -3'
miRNA:   3'- -GGGCUCa--GGCAGCUCGu-GCUGC-----AGUG- -5'
9016 5' -56.3 NC_002512.2 + 10429 0.69 0.860496
Target:  5'- aCCGcGUcgucgCCGUCGGGCACGGgGgCGCg -3'
miRNA:   3'- gGGCuCA-----GGCAGCUCGUGCUgCaGUG- -5'
9016 5' -56.3 NC_002512.2 + 11230 0.69 0.867685
Target:  5'- gCCCGGguauccgccuccGUCCGcCGGGCGCGACaggGUCcCg -3'
miRNA:   3'- -GGGCU------------CAGGCaGCUCGUGCUG---CAGuG- -5'
9016 5' -56.3 NC_002512.2 + 11777 0.69 0.894473
Target:  5'- aCCCGAGcgaCCc-CGGGCGCGACGccCGCu -3'
miRNA:   3'- -GGGCUCa--GGcaGCUCGUGCUGCa-GUG- -5'
9016 5' -56.3 NC_002512.2 + 12302 0.66 0.967826
Target:  5'- cCCCGAGgcggcgCCGcCGgaccGGCuCGcCGUCGCg -3'
miRNA:   3'- -GGGCUCa-----GGCaGC----UCGuGCuGCAGUG- -5'
9016 5' -56.3 NC_002512.2 + 12382 0.69 0.867685
Target:  5'- cCCCGAGcucgCCuUCGGGCGgCGGCGgcggCGCc -3'
miRNA:   3'- -GGGCUCa---GGcAGCUCGU-GCUGCa---GUG- -5'
9016 5' -56.3 NC_002512.2 + 15468 0.69 0.860496
Target:  5'- -aCGcGGUCC-UCGGGCGCGGCG-CGCu -3'
miRNA:   3'- ggGC-UCAGGcAGCUCGUGCUGCaGUG- -5'
9016 5' -56.3 NC_002512.2 + 16889 0.66 0.967826
Target:  5'- cCCCGGGcCCGaCGGcCGCGGCGacgaugaggUCGCa -3'
miRNA:   3'- -GGGCUCaGGCaGCUcGUGCUGC---------AGUG- -5'
9016 5' -56.3 NC_002512.2 + 17682 0.66 0.96158
Target:  5'- gCCGAcgaucUCCucGUCGAGCAgcgUGACGUUGCg -3'
miRNA:   3'- gGGCUc----AGG--CAGCUCGU---GCUGCAGUG- -5'
9016 5' -56.3 NC_002512.2 + 18451 0.73 0.695887
Target:  5'- gCCCGAGcUCCGggcaGAagggcaGCGCGACGUCGu -3'
miRNA:   3'- -GGGCUC-AGGCag--CU------CGUGCUGCAGUg -5'
9016 5' -56.3 NC_002512.2 + 19951 0.73 0.67661
Target:  5'- gUCGAGcagCCGaagaccUCGAGCAUGACGUUGCa -3'
miRNA:   3'- gGGCUCa--GGC------AGCUCGUGCUGCAGUG- -5'
9016 5' -56.3 NC_002512.2 + 21968 0.68 0.906633
Target:  5'- aCCGGGcCCGuUCGAGCuCcGCGUCGa -3'
miRNA:   3'- gGGCUCaGGC-AGCUCGuGcUGCAGUg -5'
9016 5' -56.3 NC_002512.2 + 23353 0.7 0.82186
Target:  5'- -aCGAGUgCGgCGAGCACGAgGUgACc -3'
miRNA:   3'- ggGCUCAgGCaGCUCGUGCUgCAgUG- -5'
9016 5' -56.3 NC_002512.2 + 24230 0.7 0.85312
Target:  5'- gUCCGAGg-CGUCGGGCccgccgACGGCGUCc- -3'
miRNA:   3'- -GGGCUCagGCAGCUCG------UGCUGCAGug -5'
9016 5' -56.3 NC_002512.2 + 24584 0.68 0.91794
Target:  5'- uCCCG-GUCCGUCGA-CGCGGgGacCGCu -3'
miRNA:   3'- -GGGCuCAGGCAGCUcGUGCUgCa-GUG- -5'
9016 5' -56.3 NC_002512.2 + 24679 0.67 0.946673
Target:  5'- uCCCGGG-CCGcUCGGGCGgGGgucuCGUCGa -3'
miRNA:   3'- -GGGCUCaGGC-AGCUCGUgCU----GCAGUg -5'
9016 5' -56.3 NC_002512.2 + 24899 0.66 0.958161
Target:  5'- cCCCGccuuccGGUccCCGUCGccCGCGGCGUCGg -3'
miRNA:   3'- -GGGC------UCA--GGCAGCucGUGCUGCAGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.