miRNA display CGI


Results 1 - 20 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9016 5' -56.3 NC_002512.2 + 75083 0.71 0.796749
Target:  5'- gUCGAGgcgCCGUUucggGGGCuCGACGUCGCc -3'
miRNA:   3'- gGGCUCa--GGCAG----CUCGuGCUGCAGUG- -5'
9016 5' -56.3 NC_002512.2 + 114683 0.73 0.695887
Target:  5'- aCCGAGUCCGUC-AGCGCGuccaGguagCGCg -3'
miRNA:   3'- gGGCUCAGGCAGcUCGUGCug--Ca---GUG- -5'
9016 5' -56.3 NC_002512.2 + 130473 0.73 0.705456
Target:  5'- uCCUGGGUCgGUCgGGGCcCGAucCGUCGCa -3'
miRNA:   3'- -GGGCUCAGgCAG-CUCGuGCU--GCAGUG- -5'
9016 5' -56.3 NC_002512.2 + 124640 0.73 0.71497
Target:  5'- aUCCGGGUgCG-CG-GCGCGGCGcUCACg -3'
miRNA:   3'- -GGGCUCAgGCaGCuCGUGCUGC-AGUG- -5'
9016 5' -56.3 NC_002512.2 + 108970 0.72 0.733796
Target:  5'- gCCCGGGUCCGUC-AGCAgGGcCGUgUACc -3'
miRNA:   3'- -GGGCUCAGGCAGcUCGUgCU-GCA-GUG- -5'
9016 5' -56.3 NC_002512.2 + 137655 0.71 0.779322
Target:  5'- gUCCGAGUCCcggucGUCGGGCACGAac-UGCg -3'
miRNA:   3'- -GGGCUCAGG-----CAGCUCGUGCUgcaGUG- -5'
9016 5' -56.3 NC_002512.2 + 60359 0.71 0.779322
Target:  5'- gCCGGGacCCGuUCGAGCugGACGcgUACa -3'
miRNA:   3'- gGGCUCa-GGC-AGCUCGugCUGCa-GUG- -5'
9016 5' -56.3 NC_002512.2 + 189542 0.71 0.779322
Target:  5'- cCCCGAGgggaaucaaUUCGacaucgCGAGCgacgGCGACGUCGCa -3'
miRNA:   3'- -GGGCUC---------AGGCa-----GCUCG----UGCUGCAGUG- -5'
9016 5' -56.3 NC_002512.2 + 85383 0.71 0.788099
Target:  5'- aCCGAGUCCGggcAGCGCaGCGUCuGCa -3'
miRNA:   3'- gGGCUCAGGCagcUCGUGcUGCAG-UG- -5'
9016 5' -56.3 NC_002512.2 + 18451 0.73 0.695887
Target:  5'- gCCCGAGcUCCGggcaGAagggcaGCGCGACGUCGu -3'
miRNA:   3'- -GGGCUC-AGGCag--CU------CGUGCUGCAGUg -5'
9016 5' -56.3 NC_002512.2 + 19951 0.73 0.67661
Target:  5'- gUCGAGcagCCGaagaccUCGAGCAUGACGUUGCa -3'
miRNA:   3'- gGGCUCa--GGC------AGCUCGUGCUGCAGUG- -5'
9016 5' -56.3 NC_002512.2 + 140222 0.73 0.666918
Target:  5'- cCCCGAGgcaCGUCGAGUACGuCGacCGCu -3'
miRNA:   3'- -GGGCUCag-GCAGCUCGUGCuGCa-GUG- -5'
9016 5' -56.3 NC_002512.2 + 25176 0.76 0.531655
Target:  5'- cCCCGGGcCCGcCGucGC-CGACGUCGCg -3'
miRNA:   3'- -GGGCUCaGGCaGCu-CGuGCUGCAGUG- -5'
9016 5' -56.3 NC_002512.2 + 1749 0.75 0.569751
Target:  5'- aCCUGAGcucgcgcCCGUCGgcgcccAGCACGACGUUGCg -3'
miRNA:   3'- -GGGCUCa------GGCAGC------UCGUGCUGCAGUG- -5'
9016 5' -56.3 NC_002512.2 + 27686 0.75 0.569751
Target:  5'- cCCgCGGGUCCGUCGGcgauccggaacGCGCGuucuccCGUCACg -3'
miRNA:   3'- -GG-GCUCAGGCAGCU-----------CGUGCu-----GCAGUG- -5'
9016 5' -56.3 NC_002512.2 + 100296 0.74 0.61822
Target:  5'- -gCGAGUUCGUCGGGgGCGACGggGCc -3'
miRNA:   3'- ggGCUCAGGCAGCUCgUGCUGCagUG- -5'
9016 5' -56.3 NC_002512.2 + 9680 0.74 0.627968
Target:  5'- cCCCGGGccgCCGUCGGGCccCGGCGgggguUCGCg -3'
miRNA:   3'- -GGGCUCa--GGCAGCUCGu-GCUGC-----AGUG- -5'
9016 5' -56.3 NC_002512.2 + 82191 0.74 0.637718
Target:  5'- gCCCGuccgCCGUCGGGC-CGGCGUCc- -3'
miRNA:   3'- -GGGCuca-GGCAGCUCGuGCUGCAGug -5'
9016 5' -56.3 NC_002512.2 + 80660 0.74 0.647465
Target:  5'- gCCGGGUCCGUCGGuccCGCGGCGgcgGCg -3'
miRNA:   3'- gGGCUCAGGCAGCUc--GUGCUGCag-UG- -5'
9016 5' -56.3 NC_002512.2 + 118202 0.73 0.666918
Target:  5'- cCCCGAGgCCGUCuGGUGCGACGggGCc -3'
miRNA:   3'- -GGGCUCaGGCAGcUCGUGCUGCagUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.