miRNA display CGI


Results 1 - 20 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9016 5' -56.3 NC_002512.2 + 82075 0.66 0.970663
Target:  5'- cCCCGAGgCUcUCGAGCcACgGGCG-CGCg -3'
miRNA:   3'- -GGGCUCaGGcAGCUCG-UG-CUGCaGUG- -5'
9016 5' -56.3 NC_002512.2 + 98307 0.66 0.958161
Target:  5'- gUCCGAGgugUCGgUGAGCACGcugaaGUCGCu -3'
miRNA:   3'- -GGGCUCa--GGCaGCUCGUGCug---CAGUG- -5'
9016 5' -56.3 NC_002512.2 + 182088 0.66 0.954539
Target:  5'- uCCgGGGUCUGggCGAaCAgGAUGUCGCc -3'
miRNA:   3'- -GGgCUCAGGCa-GCUcGUgCUGCAGUG- -5'
9016 5' -56.3 NC_002512.2 + 170599 1.12 0.003307
Target:  5'- aCCCGAGUCCGUCGAGCACGACGUCACg -3'
miRNA:   3'- -GGGCUCAGGCAGCUCGUGCUGCAGUG- -5'
9016 5' -56.3 NC_002512.2 + 132005 0.66 0.967826
Target:  5'- cCCCGGGcgCCGgggggaccUCG-GCgGCGACGUCGu -3'
miRNA:   3'- -GGGCUCa-GGC--------AGCuCG-UGCUGCAGUg -5'
9016 5' -56.3 NC_002512.2 + 82112 0.66 0.967826
Target:  5'- uUCCGAG-CCG-CGAGuCGgGACGgccgCGCu -3'
miRNA:   3'- -GGGCUCaGGCaGCUC-GUgCUGCa---GUG- -5'
9016 5' -56.3 NC_002512.2 + 126755 0.66 0.967826
Target:  5'- gCCCGAGacgCC-UCgGGGCGCGGCGgcgGCg -3'
miRNA:   3'- -GGGCUCa--GGcAG-CUCGUGCUGCag-UG- -5'
9016 5' -56.3 NC_002512.2 + 131577 0.66 0.9648
Target:  5'- cCCCGAGcCCcUCGGGaaaGACGUCc- -3'
miRNA:   3'- -GGGCUCaGGcAGCUCgugCUGCAGug -5'
9016 5' -56.3 NC_002512.2 + 141897 0.66 0.964487
Target:  5'- uCUCGGGUUccaucgcggacaCGUUGAuccacucGUACGGCGUCACc -3'
miRNA:   3'- -GGGCUCAG------------GCAGCU-------CGUGCUGCAGUG- -5'
9016 5' -56.3 NC_002512.2 + 180443 0.66 0.958161
Target:  5'- cCCCGGGcggcgcCCGUCauuucucgacGGCuCGGCGUCGCg -3'
miRNA:   3'- -GGGCUCa-----GGCAGc---------UCGuGCUGCAGUG- -5'
9016 5' -56.3 NC_002512.2 + 191889 0.66 0.958161
Target:  5'- cCCCGAGcggCCGUCcauucacauggGAGCGCGcuaugauCGUgACg -3'
miRNA:   3'- -GGGCUCa--GGCAG-----------CUCGUGCu------GCAgUG- -5'
9016 5' -56.3 NC_002512.2 + 222680 0.66 0.9648
Target:  5'- cCUCGAGUUCGacugCGcccGGCACGgggaggaguGCGUCGCc -3'
miRNA:   3'- -GGGCUCAGGCa---GC---UCGUGC---------UGCAGUG- -5'
9016 5' -56.3 NC_002512.2 + 155476 0.66 0.970663
Target:  5'- aCCgCGAGUUCGUCG-GCAC--CGUC-Cg -3'
miRNA:   3'- -GG-GCUCAGGCAGCuCGUGcuGCAGuG- -5'
9016 5' -56.3 NC_002512.2 + 221811 0.66 0.958161
Target:  5'- -aCGAGUUCGagGAGCucgucuCGGCGUC-Cg -3'
miRNA:   3'- ggGCUCAGGCagCUCGu-----GCUGCAGuG- -5'
9016 5' -56.3 NC_002512.2 + 119748 0.66 0.970663
Target:  5'- gCCGuGaCCGUacuaCGAGCgACG-CGUCGCg -3'
miRNA:   3'- gGGCuCaGGCA----GCUCG-UGCuGCAGUG- -5'
9016 5' -56.3 NC_002512.2 + 100380 0.66 0.9648
Target:  5'- gCCGAGUCagcaGgagCGAGCuccaguuggcgACGGCGUCc- -3'
miRNA:   3'- gGGCUCAGg---Ca--GCUCG-----------UGCUGCAGug -5'
9016 5' -56.3 NC_002512.2 + 189219 0.66 0.958161
Target:  5'- gCUCGAcgucggauccGUCCGUCGccgucGCG-GACGUCACc -3'
miRNA:   3'- -GGGCU----------CAGGCAGCu----CGUgCUGCAGUG- -5'
9016 5' -56.3 NC_002512.2 + 222218 0.66 0.954539
Target:  5'- gUCGGGguggCCGUCGGGgcCGCGuccuuCGUCGCc -3'
miRNA:   3'- gGGCUCa---GGCAGCUC--GUGCu----GCAGUG- -5'
9016 5' -56.3 NC_002512.2 + 97030 0.66 0.970663
Target:  5'- aCgGAGUCCGUCuucuucuGCAuCGugGUCuACu -3'
miRNA:   3'- gGgCUCAGGCAGcu-----CGU-GCugCAG-UG- -5'
9016 5' -56.3 NC_002512.2 + 209280 0.66 0.967826
Target:  5'- uUCGAGgaCGUgGAGCGCuGCGUCAa -3'
miRNA:   3'- gGGCUCagGCAgCUCGUGcUGCAGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.