miRNA display CGI


Results 1 - 20 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9016 5' -56.3 NC_002512.2 + 155247 0.66 0.9648
Target:  5'- uCCCGc--CCGUCGcGGCGuCGACGgcUCGCg -3'
miRNA:   3'- -GGGCucaGGCAGC-UCGU-GCUGC--AGUG- -5'
9016 5' -56.3 NC_002512.2 + 130011 0.66 0.970663
Target:  5'- gCCCGuGUCCG-CGcucCGCGugGUuCACc -3'
miRNA:   3'- -GGGCuCAGGCaGCuc-GUGCugCA-GUG- -5'
9016 5' -56.3 NC_002512.2 + 104078 0.66 0.970663
Target:  5'- uCCCGucGUCCGUCcGGuCGcCGugGUUGCc -3'
miRNA:   3'- -GGGCu-CAGGCAGcUC-GU-GCugCAGUG- -5'
9016 5' -56.3 NC_002512.2 + 125866 0.66 0.967826
Target:  5'- uCCCucuGGUCCGgCGGGCACGGCu---- -3'
miRNA:   3'- -GGGc--UCAGGCaGCUCGUGCUGcagug -5'
9016 5' -56.3 NC_002512.2 + 55732 0.66 0.964487
Target:  5'- cCCCGGGaCgcggugaccacggUGUCGAGCGaguCGGCGUCGu -3'
miRNA:   3'- -GGGCUCaG-------------GCAGCUCGU---GCUGCAGUg -5'
9016 5' -56.3 NC_002512.2 + 100345 0.66 0.9648
Target:  5'- -gCGGGcgCCGgccaCGcAGCACGGCGUCGu -3'
miRNA:   3'- ggGCUCa-GGCa---GC-UCGUGCUGCAGUg -5'
9016 5' -56.3 NC_002512.2 + 12302 0.66 0.967826
Target:  5'- cCCCGAGgcggcgCCGcCGgaccGGCuCGcCGUCGCg -3'
miRNA:   3'- -GGGCUCa-----GGCaGC----UCGuGCuGCAGUG- -5'
9016 5' -56.3 NC_002512.2 + 136573 0.66 0.967826
Target:  5'- aUCCGGGUcagcCCGgugcgCGGGUugGACGcgUACa -3'
miRNA:   3'- -GGGCUCA----GGCa----GCUCGugCUGCa-GUG- -5'
9016 5' -56.3 NC_002512.2 + 103096 0.66 0.967826
Target:  5'- uCCCGGGgaCGggCGcGGCACG-CGUCGCc -3'
miRNA:   3'- -GGGCUCagGCa-GC-UCGUGCuGCAGUG- -5'
9016 5' -56.3 NC_002512.2 + 106666 0.66 0.96158
Target:  5'- cUCCGAGauguagCGUCG-GUACG-CGUCGCg -3'
miRNA:   3'- -GGGCUCag----GCAGCuCGUGCuGCAGUG- -5'
9016 5' -56.3 NC_002512.2 + 24899 0.66 0.958161
Target:  5'- cCCCGccuuccGGUccCCGUCGccCGCGGCGUCGg -3'
miRNA:   3'- -GGGC------UCA--GGCAGCucGUGCUGCAGUg -5'
9016 5' -56.3 NC_002512.2 + 134768 0.66 0.967826
Target:  5'- gUCCG-GUUCGUCGgcgGGCcCGcCGUCGCc -3'
miRNA:   3'- -GGGCuCAGGCAGC---UCGuGCuGCAGUG- -5'
9016 5' -56.3 NC_002512.2 + 83648 0.66 0.9648
Target:  5'- uCCCG-GUCgaGgcaGAGCGCGugGUC-Ca -3'
miRNA:   3'- -GGGCuCAGg-Cag-CUCGUGCugCAGuG- -5'
9016 5' -56.3 NC_002512.2 + 112885 0.66 0.958161
Target:  5'- gCCCGGcGUucUCGUCGGuCGCcGCGUCGCg -3'
miRNA:   3'- -GGGCU-CA--GGCAGCUcGUGcUGCAGUG- -5'
9016 5' -56.3 NC_002512.2 + 83797 0.66 0.958161
Target:  5'- gCCGAGgacCgCGUCGGGCGCGcCGgcgGCg -3'
miRNA:   3'- gGGCUCa--G-GCAGCUCGUGCuGCag-UG- -5'
9016 5' -56.3 NC_002512.2 + 138049 0.66 0.96158
Target:  5'- gCCGGGaCUgGUCGAcGgACGGCGUCAg -3'
miRNA:   3'- gGGCUCaGG-CAGCU-CgUGCUGCAGUg -5'
9016 5' -56.3 NC_002512.2 + 86165 0.66 0.958161
Target:  5'- cUCCGAGgcccugCUGcggGAGCugGAgGUCGCg -3'
miRNA:   3'- -GGGCUCa-----GGCag-CUCGugCUgCAGUG- -5'
9016 5' -56.3 NC_002512.2 + 16889 0.66 0.967826
Target:  5'- cCCCGGGcCCGaCGGcCGCGGCGacgaugaggUCGCa -3'
miRNA:   3'- -GGGCUCaGGCaGCUcGUGCUGC---------AGUG- -5'
9016 5' -56.3 NC_002512.2 + 78645 0.66 0.9648
Target:  5'- aCCGAgaugauggcGUCgGUCGAGC-CGGCGcCGg -3'
miRNA:   3'- gGGCU---------CAGgCAGCUCGuGCUGCaGUg -5'
9016 5' -56.3 NC_002512.2 + 17682 0.66 0.96158
Target:  5'- gCCGAcgaucUCCucGUCGAGCAgcgUGACGUUGCg -3'
miRNA:   3'- gGGCUc----AGG--CAGCUCGU---GCUGCAGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.