miRNA display CGI


Results 1 - 20 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9016 5' -56.3 NC_002512.2 + 227655 0.77 0.467458
Target:  5'- gCCCGGGUCCGgaggaaGAGCGgCGGCGcCGCc -3'
miRNA:   3'- -GGGCUCAGGCag----CUCGU-GCUGCaGUG- -5'
9016 5' -56.3 NC_002512.2 + 226690 0.71 0.805264
Target:  5'- gCCGGG-CCGUCGcccGCGgCGGCGUCGa -3'
miRNA:   3'- gGGCUCaGGCAGCu--CGU-GCUGCAGUg -5'
9016 5' -56.3 NC_002512.2 + 225644 0.68 0.906633
Target:  5'- cCCCGAaccacCCGUCgGGGCuCGACGUCcCg -3'
miRNA:   3'- -GGGCUca---GGCAG-CUCGuGCUGCAGuG- -5'
9016 5' -56.3 NC_002512.2 + 224586 0.67 0.93328
Target:  5'- aCCCGGGUUaCGUCaGGGCGCGG-GaCGCg -3'
miRNA:   3'- -GGGCUCAG-GCAG-CUCGUGCUgCaGUG- -5'
9016 5' -56.3 NC_002512.2 + 223086 0.68 0.900658
Target:  5'- aCCCGGGUCCG-CGGcuGCGuCGACGg--- -3'
miRNA:   3'- -GGGCUCAGGCaGCU--CGU-GCUGCagug -5'
9016 5' -56.3 NC_002512.2 + 222680 0.66 0.9648
Target:  5'- cCUCGAGUUCGacugCGcccGGCACGgggaggaguGCGUCGCc -3'
miRNA:   3'- -GGGCUCAGGCa---GC---UCGUGC---------UGCAGUG- -5'
9016 5' -56.3 NC_002512.2 + 222218 0.66 0.954539
Target:  5'- gUCGGGguggCCGUCGGGgcCGCGuccuuCGUCGCc -3'
miRNA:   3'- gGGCUCa---GGCAGCUC--GUGCu----GCAGUG- -5'
9016 5' -56.3 NC_002512.2 + 222185 0.67 0.942423
Target:  5'- uCCCGGG-CCG-CG-GC-CGGCGUCGu -3'
miRNA:   3'- -GGGCUCaGGCaGCuCGuGCUGCAGUg -5'
9016 5' -56.3 NC_002512.2 + 221811 0.66 0.958161
Target:  5'- -aCGAGUUCGagGAGCucgucuCGGCGUC-Cg -3'
miRNA:   3'- ggGCUCAGGCagCUCGu-----GCUGCAGuG- -5'
9016 5' -56.3 NC_002512.2 + 220756 0.72 0.733796
Target:  5'- gCUGGG-CCGUCGAgGC-CGACGUCGg -3'
miRNA:   3'- gGGCUCaGGCAGCU-CGuGCUGCAGUg -5'
9016 5' -56.3 NC_002512.2 + 218728 0.67 0.942423
Target:  5'- aUCCGGacgacCCGUCGAGCGCG-UGUC-Cg -3'
miRNA:   3'- -GGGCUca---GGCAGCUCGUGCuGCAGuG- -5'
9016 5' -56.3 NC_002512.2 + 218083 0.71 0.813637
Target:  5'- aCCCGucccuGUCCGUgGGGaaGCGgGCGUCGCg -3'
miRNA:   3'- -GGGCu----CAGGCAgCUCg-UGC-UGCAGUG- -5'
9016 5' -56.3 NC_002512.2 + 217763 0.67 0.937959
Target:  5'- cCCCGGGcCCGUCcccgucGC-CGGgGUCGCg -3'
miRNA:   3'- -GGGCUCaGGCAGcu----CGuGCUgCAGUG- -5'
9016 5' -56.3 NC_002512.2 + 215353 0.7 0.844797
Target:  5'- gCCCGGcUCCGUCGAcuccgucGCGCGcuucgcCGUCGCc -3'
miRNA:   3'- -GGGCUcAGGCAGCU-------CGUGCu-----GCAGUG- -5'
9016 5' -56.3 NC_002512.2 + 215047 0.68 0.91794
Target:  5'- uCCCGAGgagcucaCCGUCGucgGCGGCGUCuACc -3'
miRNA:   3'- -GGGCUCa------GGCAGCucgUGCUGCAG-UG- -5'
9016 5' -56.3 NC_002512.2 + 214163 0.69 0.894473
Target:  5'- aCCGGGaccccuaCGUCGAGCcCGucauCGUCGCg -3'
miRNA:   3'- gGGCUCag-----GCAGCUCGuGCu---GCAGUG- -5'
9016 5' -56.3 NC_002512.2 + 213910 0.77 0.449848
Target:  5'- cCCCGGGggagaucgaCCGcggCGAGUGCGACGUCGCc -3'
miRNA:   3'- -GGGCUCa--------GGCa--GCUCGUGCUGCAGUG- -5'
9016 5' -56.3 NC_002512.2 + 212176 0.7 0.837829
Target:  5'- gCUGGG-CCGUCcaGGCGCGcaACGUCACg -3'
miRNA:   3'- gGGCUCaGGCAGc-UCGUGC--UGCAGUG- -5'
9016 5' -56.3 NC_002512.2 + 209280 0.66 0.967826
Target:  5'- uUCGAGgaCGUgGAGCGCuGCGUCAa -3'
miRNA:   3'- gGGCUCagGCAgCUCGUGcUGCAGUg -5'
9016 5' -56.3 NC_002512.2 + 209155 0.67 0.942423
Target:  5'- -gCGAGcacgUCGUCGucGGCACGGCG-CGCa -3'
miRNA:   3'- ggGCUCa---GGCAGC--UCGUGCUGCaGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.