miRNA display CGI


Results 41 - 60 of 296 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9019 5' -57.7 NC_002512.2 + 112904 0.66 0.933295
Target:  5'- cCGUCgGCCCGCccgGACggGgcgUCgGCGGCCc -3'
miRNA:   3'- -GCAG-UGGGCG---CUGgaCa--AGgCGCUGG- -5'
9019 5' -57.7 NC_002512.2 + 181026 0.66 0.933295
Target:  5'- gGagGCCCGCGuCCUGggcaggaggCCGCacaGCCg -3'
miRNA:   3'- gCagUGGGCGCuGGACaa-------GGCGc--UGG- -5'
9019 5' -57.7 NC_002512.2 + 59595 0.66 0.933295
Target:  5'- --aCAUCCaguuCGAcaaCCUGUUCCGCGAgCg -3'
miRNA:   3'- gcaGUGGGc---GCU---GGACAAGGCGCUgG- -5'
9019 5' -57.7 NC_002512.2 + 191359 0.66 0.93282
Target:  5'- gGUCGCCgCGCGACCUuggcucgGUcuccUUCGCGuuCu -3'
miRNA:   3'- gCAGUGG-GCGCUGGA-------CA----AGGCGCugG- -5'
9019 5' -57.7 NC_002512.2 + 116959 0.66 0.930408
Target:  5'- gCGcCAUCCGCaacgagcugcugaucGAgCUGgUCCGCGACg -3'
miRNA:   3'- -GCaGUGGGCG---------------CUgGACaAGGCGCUGg -5'
9019 5' -57.7 NC_002512.2 + 150503 0.66 0.928441
Target:  5'- uCGUcCGCCCGCgggucgggGugCaGUUCCacgcgGCGGCCg -3'
miRNA:   3'- -GCA-GUGGGCG--------CugGaCAAGG-----CGCUGG- -5'
9019 5' -57.7 NC_002512.2 + 218968 0.66 0.928441
Target:  5'- cCGUCGCCgGCugggagguccGGCCcGgggUCCGCaACCg -3'
miRNA:   3'- -GCAGUGGgCG----------CUGGaCa--AGGCGcUGG- -5'
9019 5' -57.7 NC_002512.2 + 181078 0.66 0.927944
Target:  5'- -cUC-CUCGCGAuccucucCCUGUgCCGCGACg -3'
miRNA:   3'- gcAGuGGGCGCU-------GGACAaGGCGCUGg -5'
9019 5' -57.7 NC_002512.2 + 190322 0.66 0.927445
Target:  5'- uGUCGCCCGUcGCCgcccuuggcaccGUcCCGCGuCCu -3'
miRNA:   3'- gCAGUGGGCGcUGGa-----------CAaGGCGCuGG- -5'
9019 5' -57.7 NC_002512.2 + 157506 0.66 0.926943
Target:  5'- gCGUC-CaCCGCGACCagacgaucaucauaUGaaaUCCGCgGGCCg -3'
miRNA:   3'- -GCAGuG-GGCGCUGG--------------ACa--AGGCG-CUGG- -5'
9019 5' -57.7 NC_002512.2 + 220671 0.66 0.923374
Target:  5'- --aCACCuCGUuccggaGCCUGUUCCGC-ACCg -3'
miRNA:   3'- gcaGUGG-GCGc-----UGGACAAGGCGcUGG- -5'
9019 5' -57.7 NC_002512.2 + 204860 0.66 0.923374
Target:  5'- gGUC-CUCGUGGagg--UCCGCGACCg -3'
miRNA:   3'- gCAGuGGGCGCUggacaAGGCGCUGG- -5'
9019 5' -57.7 NC_002512.2 + 154654 0.66 0.923374
Target:  5'- cCGUC-CCgaGCGACCg--UCCgacgucggGCGACCg -3'
miRNA:   3'- -GCAGuGGg-CGCUGGacaAGG--------CGCUGG- -5'
9019 5' -57.7 NC_002512.2 + 194141 0.66 0.923374
Target:  5'- --aCGCCaGCGGcaugaagauCCUGaUCUGCGACCg -3'
miRNA:   3'- gcaGUGGgCGCU---------GGACaAGGCGCUGG- -5'
9019 5' -57.7 NC_002512.2 + 198360 0.66 0.923374
Target:  5'- gGUCACCgccgugucCGUGGCC---UCCGUGAUCa -3'
miRNA:   3'- gCAGUGG--------GCGCUGGacaAGGCGCUGG- -5'
9019 5' -57.7 NC_002512.2 + 120578 0.66 0.923374
Target:  5'- aCGUCcCCCGaccCGACCU--UCUGCGuCCc -3'
miRNA:   3'- -GCAGuGGGC---GCUGGAcaAGGCGCuGG- -5'
9019 5' -57.7 NC_002512.2 + 177929 0.66 0.923374
Target:  5'- uCGUCGCUCgGCGGC----UCCGCGuCCg -3'
miRNA:   3'- -GCAGUGGG-CGCUGgacaAGGCGCuGG- -5'
9019 5' -57.7 NC_002512.2 + 155664 0.66 0.923374
Target:  5'- cCGuUCGcCCCGCG-UCgGgaCCGCGGCCc -3'
miRNA:   3'- -GC-AGU-GGGCGCuGGaCaaGGCGCUGG- -5'
9019 5' -57.7 NC_002512.2 + 136105 0.66 0.923374
Target:  5'- cCGUCACCCGau-CCgc-UCC-CGACCu -3'
miRNA:   3'- -GCAGUGGGCgcuGGacaAGGcGCUGG- -5'
9019 5' -57.7 NC_002512.2 + 150318 0.66 0.923374
Target:  5'- gCGagACCgGCGGCgaGgacgCCGCGGCg -3'
miRNA:   3'- -GCagUGGgCGCUGgaCaa--GGCGCUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.