miRNA display CGI


Results 21 - 40 of 296 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9019 5' -57.7 NC_002512.2 + 39676 0.66 0.942365
Target:  5'- cCGUC-CCgGaCGACCgcg-CCGcCGACCu -3'
miRNA:   3'- -GCAGuGGgC-GCUGGacaaGGC-GCUGG- -5'
9019 5' -57.7 NC_002512.2 + 221019 0.66 0.942365
Target:  5'- uGUCACCaCGCGGCCaccaacgggGUgCCGCccGGCa -3'
miRNA:   3'- gCAGUGG-GCGCUGGa--------CAaGGCG--CUGg -5'
9019 5' -57.7 NC_002512.2 + 98121 0.66 0.942365
Target:  5'- cCGcUugCCGgGGCgCUGgucgUCGCGGCCg -3'
miRNA:   3'- -GCaGugGGCgCUG-GACaa--GGCGCUGG- -5'
9019 5' -57.7 NC_002512.2 + 151533 0.66 0.941932
Target:  5'- gGUCGCuuGCGGaacgccgaCUGacgaaccUUCCGCGGuCCg -3'
miRNA:   3'- gCAGUGggCGCUg-------GAC-------AAGGCGCU-GG- -5'
9019 5' -57.7 NC_002512.2 + 220864 0.66 0.941059
Target:  5'- aCGUCGUCCGCGggGCCUcggcgcucuccaucGUggCCGaCGACCu -3'
miRNA:   3'- -GCAGUGGGCGC--UGGA--------------CAa-GGC-GCUGG- -5'
9019 5' -57.7 NC_002512.2 + 219415 0.66 0.939733
Target:  5'- gCGaCGCCCacgcccggggcggcgGCGGCCUccUCCGCGcCCc -3'
miRNA:   3'- -GCaGUGGG---------------CGCUGGAcaAGGCGCuGG- -5'
9019 5' -57.7 NC_002512.2 + 129447 0.66 0.937936
Target:  5'- cCGUCGCCCGgaaGACCUGcgaggcccUCgGaCGACa -3'
miRNA:   3'- -GCAGUGGGCg--CUGGACa-------AGgC-GCUGg -5'
9019 5' -57.7 NC_002512.2 + 25124 0.66 0.937936
Target:  5'- uCGUC-CCCGCGcCCcaggCCGgGAUCg -3'
miRNA:   3'- -GCAGuGGGCGCuGGacaaGGCgCUGG- -5'
9019 5' -57.7 NC_002512.2 + 75910 0.66 0.937936
Target:  5'- uGUUugCCGCcGCCgGcgCCGCcgGACCc -3'
miRNA:   3'- gCAGugGGCGcUGGaCaaGGCG--CUGG- -5'
9019 5' -57.7 NC_002512.2 + 211732 0.66 0.937936
Target:  5'- uGU-GCCU-CGGCCUGgcCCGCGACg -3'
miRNA:   3'- gCAgUGGGcGCUGGACaaGGCGCUGg -5'
9019 5' -57.7 NC_002512.2 + 165999 0.66 0.937936
Target:  5'- uCGUCAacucuCCCGaCGGCUccggggacgcGUUCgGCGGCCg -3'
miRNA:   3'- -GCAGU-----GGGC-GCUGGa---------CAAGgCGCUGG- -5'
9019 5' -57.7 NC_002512.2 + 140844 0.66 0.937936
Target:  5'- uCGUCGCCCucugaaagugcGCGGCCUG---CGCGAa- -3'
miRNA:   3'- -GCAGUGGG-----------CGCUGGACaagGCGCUgg -5'
9019 5' -57.7 NC_002512.2 + 212447 0.66 0.937936
Target:  5'- gGcCGgCCGCGACCg---CCGCGAg- -3'
miRNA:   3'- gCaGUgGGCGCUGGacaaGGCGCUgg -5'
9019 5' -57.7 NC_002512.2 + 213690 0.66 0.937482
Target:  5'- gCGUCGCCCGCGGuCCUcgaacugGcUUCUuCGACg -3'
miRNA:   3'- -GCAGUGGGCGCU-GGA-------C-AAGGcGCUGg -5'
9019 5' -57.7 NC_002512.2 + 45242 0.66 0.933295
Target:  5'- gCGgCGCCCGCGGaCUcg-CCGuCGGCCg -3'
miRNA:   3'- -GCaGUGGGCGCUgGAcaaGGC-GCUGG- -5'
9019 5' -57.7 NC_002512.2 + 59595 0.66 0.933295
Target:  5'- --aCAUCCaguuCGAcaaCCUGUUCCGCGAgCg -3'
miRNA:   3'- gcaGUGGGc---GCU---GGACAAGGCGCUgG- -5'
9019 5' -57.7 NC_002512.2 + 101459 0.66 0.933295
Target:  5'- gGcCGCCCGCGAggaggGcUCCGgCGACCc -3'
miRNA:   3'- gCaGUGGGCGCUgga--CaAGGC-GCUGG- -5'
9019 5' -57.7 NC_002512.2 + 108966 0.66 0.933295
Target:  5'- gGUCGCCCGgGuCCgucagcaGggCCGUGuACCu -3'
miRNA:   3'- gCAGUGGGCgCuGGa------CaaGGCGC-UGG- -5'
9019 5' -57.7 NC_002512.2 + 198733 0.66 0.933295
Target:  5'- gCGUCuCCCG-GGCCaGgUCCGCGAa- -3'
miRNA:   3'- -GCAGuGGGCgCUGGaCaAGGCGCUgg -5'
9019 5' -57.7 NC_002512.2 + 1673 0.66 0.933295
Target:  5'- cCGUCucGCCCG--GCCUcgaCCGCGGCCu -3'
miRNA:   3'- -GCAG--UGGGCgcUGGAcaaGGCGCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.