miRNA display CGI


Results 21 - 40 of 296 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9019 5' -57.7 NC_002512.2 + 219415 0.66 0.939733
Target:  5'- gCGaCGCCCacgcccggggcggcgGCGGCCUccUCCGCGcCCc -3'
miRNA:   3'- -GCaGUGGG---------------CGCUGGAcaAGGCGCuGG- -5'
9019 5' -57.7 NC_002512.2 + 78304 0.66 0.946584
Target:  5'- uCGUCucguuUCCGCGACUgcga--GCGACCg -3'
miRNA:   3'- -GCAGu----GGGCGCUGGacaaggCGCUGG- -5'
9019 5' -57.7 NC_002512.2 + 220864 0.66 0.941059
Target:  5'- aCGUCGUCCGCGggGCCUcggcgcucuccaucGUggCCGaCGACCu -3'
miRNA:   3'- -GCAGUGGGCGC--UGGA--------------CAa-GGC-GCUGG- -5'
9019 5' -57.7 NC_002512.2 + 150692 0.66 0.942365
Target:  5'- gGUCGCCC-CGACggaccgUUGgcucUCgGCGGCCg -3'
miRNA:   3'- gCAGUGGGcGCUG------GACa---AGgCGCUGG- -5'
9019 5' -57.7 NC_002512.2 + 25124 0.66 0.937936
Target:  5'- uCGUC-CCCGCGcCCcaggCCGgGAUCg -3'
miRNA:   3'- -GCAGuGGGCGCuGGacaaGGCgCUGG- -5'
9019 5' -57.7 NC_002512.2 + 78966 0.66 0.946584
Target:  5'- aGUCcgGCUCG-GACUUagcGUcgUCCGCGGCCg -3'
miRNA:   3'- gCAG--UGGGCgCUGGA---CA--AGGCGCUGG- -5'
9019 5' -57.7 NC_002512.2 + 197801 0.66 0.942365
Target:  5'- --aCACCCG-GGCCgccaUCgGCGACCc -3'
miRNA:   3'- gcaGUGGGCgCUGGaca-AGgCGCUGG- -5'
9019 5' -57.7 NC_002512.2 + 1673 0.66 0.933295
Target:  5'- cCGUCucGCCCG--GCCUcgaCCGCGGCCu -3'
miRNA:   3'- -GCAG--UGGGCgcUGGAcaaGGCGCUGG- -5'
9019 5' -57.7 NC_002512.2 + 220671 0.66 0.923374
Target:  5'- --aCACCuCGUuccggaGCCUGUUCCGC-ACCg -3'
miRNA:   3'- gcaGUGG-GCGc-----UGGACAAGGCGcUGG- -5'
9019 5' -57.7 NC_002512.2 + 172692 0.66 0.946584
Target:  5'- cCGUCcUgCGCGACCgcugCCGCGAg- -3'
miRNA:   3'- -GCAGuGgGCGCUGGacaaGGCGCUgg -5'
9019 5' -57.7 NC_002512.2 + 108966 0.66 0.933295
Target:  5'- gGUCGCCCGgGuCCgucagcaGggCCGUGuACCu -3'
miRNA:   3'- gCAGUGGGCgCuGGa------CaaGGCGC-UGG- -5'
9019 5' -57.7 NC_002512.2 + 140844 0.66 0.937936
Target:  5'- uCGUCGCCCucugaaagugcGCGGCCUG---CGCGAa- -3'
miRNA:   3'- -GCAGUGGG-----------CGCUGGACaagGCGCUgg -5'
9019 5' -57.7 NC_002512.2 + 212447 0.66 0.937936
Target:  5'- gGcCGgCCGCGACCg---CCGCGAg- -3'
miRNA:   3'- gCaGUgGGCGCUGGacaaGGCGCUgg -5'
9019 5' -57.7 NC_002512.2 + 165999 0.66 0.937936
Target:  5'- uCGUCAacucuCCCGaCGGCUccggggacgcGUUCgGCGGCCg -3'
miRNA:   3'- -GCAGU-----GGGC-GCUGGa---------CAAGgCGCUGG- -5'
9019 5' -57.7 NC_002512.2 + 101459 0.66 0.933295
Target:  5'- gGcCGCCCGCGAggaggGcUCCGgCGACCc -3'
miRNA:   3'- gCaGUGGGCGCUgga--CaAGGC-GCUGG- -5'
9019 5' -57.7 NC_002512.2 + 226121 0.66 0.942365
Target:  5'- gCGUCaggacaACCCGaGACgUG-UCCGUGAUCu -3'
miRNA:   3'- -GCAG------UGGGCgCUGgACaAGGCGCUGG- -5'
9019 5' -57.7 NC_002512.2 + 94427 0.66 0.942365
Target:  5'- aGUCGgCCGCGucgaacGCCUGguggacggCCuCGGCCa -3'
miRNA:   3'- gCAGUgGGCGC------UGGACaa------GGcGCUGG- -5'
9019 5' -57.7 NC_002512.2 + 153203 0.66 0.942365
Target:  5'- gCGgCACCCGgGACCcGUcCCGCc-CCg -3'
miRNA:   3'- -GCaGUGGGCgCUGGaCAaGGCGcuGG- -5'
9019 5' -57.7 NC_002512.2 + 98121 0.66 0.942365
Target:  5'- cCGcUugCCGgGGCgCUGgucgUCGCGGCCg -3'
miRNA:   3'- -GCaGugGGCgCUG-GACaa--GGCGCUGG- -5'
9019 5' -57.7 NC_002512.2 + 190322 0.66 0.927445
Target:  5'- uGUCGCCCGUcGCCgcccuuggcaccGUcCCGCGuCCu -3'
miRNA:   3'- gCAGUGGGCGcUGGa-----------CAaGGCGCuGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.