miRNA display CGI


Results 21 - 40 of 296 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9019 5' -57.7 NC_002512.2 + 15068 0.73 0.63106
Target:  5'- uCGUCA-CCGCGACuCUcGgagacggaccUCCGCGACCa -3'
miRNA:   3'- -GCAGUgGGCGCUG-GA-Ca---------AGGCGCUGG- -5'
9019 5' -57.7 NC_002512.2 + 16255 0.68 0.844954
Target:  5'- cCGUCGCCCGCGGCggccaagagUCaGgGACCg -3'
miRNA:   3'- -GCAGUGGGCGCUGgaca-----AGgCgCUGG- -5'
9019 5' -57.7 NC_002512.2 + 24839 0.74 0.582851
Target:  5'- gGUCcggGCCCGCGGCCgg-UCgGCGGCg -3'
miRNA:   3'- gCAG---UGGGCGCUGGacaAGgCGCUGg -5'
9019 5' -57.7 NC_002512.2 + 24915 0.71 0.726625
Target:  5'- cCGUCGCCCGCGGCgUcGggCU-CGGCCc -3'
miRNA:   3'- -GCAGUGGGCGCUGgA-CaaGGcGCUGG- -5'
9019 5' -57.7 NC_002512.2 + 25124 0.66 0.937936
Target:  5'- uCGUC-CCCGCGcCCcaggCCGgGAUCg -3'
miRNA:   3'- -GCAGuGGGCGCuGGacaaGGCgCUGG- -5'
9019 5' -57.7 NC_002512.2 + 25187 0.68 0.861241
Target:  5'- cCGUCGCCgacguCGCGuCCg---CCGCGACg -3'
miRNA:   3'- -GCAGUGG-----GCGCuGGacaaGGCGCUGg -5'
9019 5' -57.7 NC_002512.2 + 25784 0.71 0.698373
Target:  5'- aCGUCgACCCGCGGgaUGUaaucgUCCGCGuagACCa -3'
miRNA:   3'- -GCAG-UGGGCGCUggACA-----AGGCGC---UGG- -5'
9019 5' -57.7 NC_002512.2 + 30083 0.67 0.888529
Target:  5'- cCGcC-CCCGCGGuaaacaucCCUGUcCCGCGAUg -3'
miRNA:   3'- -GCaGuGGGCGCU--------GGACAaGGCGCUGg -5'
9019 5' -57.7 NC_002512.2 + 30374 0.77 0.394737
Target:  5'- uGUCGCCCGacgaccuCGACCUGaUCCucGCGGCCc -3'
miRNA:   3'- gCAGUGGGC-------GCUGGACaAGG--CGCUGG- -5'
9019 5' -57.7 NC_002512.2 + 33491 0.7 0.780954
Target:  5'- gCGUC-CCCGCG-CCaGacCCGCGGCg -3'
miRNA:   3'- -GCAGuGGGCGCuGGaCaaGGCGCUGg -5'
9019 5' -57.7 NC_002512.2 + 35266 0.7 0.789637
Target:  5'- gGUCcCCCGCGGCgacggCCGCGGCg -3'
miRNA:   3'- gCAGuGGGCGCUGgacaaGGCGCUGg -5'
9019 5' -57.7 NC_002512.2 + 35926 0.7 0.757841
Target:  5'- aGcCGCCgGCGGCCUcucgcgccagacgacGUUCCcCGGCCg -3'
miRNA:   3'- gCaGUGGgCGCUGGA---------------CAAGGcGCUGG- -5'
9019 5' -57.7 NC_002512.2 + 38296 0.7 0.789637
Target:  5'- aCGUgGguCCCGCagaacaguGGCCUGaacUCCGUGACCg -3'
miRNA:   3'- -GCAgU--GGGCG--------CUGGACa--AGGCGCUGG- -5'
9019 5' -57.7 NC_002512.2 + 38566 0.69 0.814895
Target:  5'- aCGgCACCCGCGuCCcGacCCGCGuCCc -3'
miRNA:   3'- -GCaGUGGGCGCuGGaCaaGGCGCuGG- -5'
9019 5' -57.7 NC_002512.2 + 38940 0.73 0.621391
Target:  5'- gCGggCGCCCGCGugCgcccgggucugGUUCCGCuGCCu -3'
miRNA:   3'- -GCa-GUGGGCGCugGa----------CAAGGCGcUGG- -5'
9019 5' -57.7 NC_002512.2 + 39676 0.66 0.942365
Target:  5'- cCGUC-CCgGaCGACCgcg-CCGcCGACCu -3'
miRNA:   3'- -GCAGuGGgC-GCUGGacaaGGC-GCUGG- -5'
9019 5' -57.7 NC_002512.2 + 39800 0.74 0.563747
Target:  5'- gGUCccgcagccgaGCCCGCuGACCgg--CCGCGGCCa -3'
miRNA:   3'- gCAG----------UGGGCG-CUGGacaaGGCGCUGG- -5'
9019 5' -57.7 NC_002512.2 + 42219 0.7 0.798193
Target:  5'- --cCGCCCGCcGCCgugaCCGUGACCg -3'
miRNA:   3'- gcaGUGGGCGcUGGacaaGGCGCUGG- -5'
9019 5' -57.7 NC_002512.2 + 45242 0.66 0.933295
Target:  5'- gCGgCGCCCGCGGaCUcg-CCGuCGGCCg -3'
miRNA:   3'- -GCaGUGGGCGCUgGAcaaGGC-GCUGG- -5'
9019 5' -57.7 NC_002512.2 + 45340 0.68 0.853945
Target:  5'- cCGUCcgccgGCCCGCGccGCCggcugaccCCGCGACUg -3'
miRNA:   3'- -GCAG-----UGGGCGC--UGGacaa----GGCGCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.