miRNA display CGI


Results 1 - 20 of 296 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9019 5' -57.7 NC_002512.2 + 423 0.71 0.71727
Target:  5'- uCG-CGCCCGCGACCgacgCCGCaaaGCCc -3'
miRNA:   3'- -GCaGUGGGCGCUGGacaaGGCGc--UGG- -5'
9019 5' -57.7 NC_002512.2 + 1673 0.66 0.933295
Target:  5'- cCGUCucGCCCG--GCCUcgaCCGCGGCCu -3'
miRNA:   3'- -GCAG--UGGGCgcUGGAcaaGGCGCUGG- -5'
9019 5' -57.7 NC_002512.2 + 1826 0.7 0.780954
Target:  5'- uCGUCuCCCGCGccgcaGCCg--UCCGCGGgCg -3'
miRNA:   3'- -GCAGuGGGCGC-----UGGacaAGGCGCUgG- -5'
9019 5' -57.7 NC_002512.2 + 2005 0.69 0.838822
Target:  5'- -cUCGCCCGCGucGCCUGagCCG-GcACCa -3'
miRNA:   3'- gcAGUGGGCGC--UGGACaaGGCgC-UGG- -5'
9019 5' -57.7 NC_002512.2 + 3111 0.66 0.946584
Target:  5'- gCGUCGCCCGagaCGuCCUcgcccUCCGCGucguCCg -3'
miRNA:   3'- -GCAGUGGGC---GCuGGAca---AGGCGCu---GG- -5'
9019 5' -57.7 NC_002512.2 + 3168 0.77 0.402777
Target:  5'- uCGUCGCCCGCGGCCUcccgucgcucgacGccgCCGCGGgCg -3'
miRNA:   3'- -GCAGUGGGCGCUGGA-------------Caa-GGCGCUgG- -5'
9019 5' -57.7 NC_002512.2 + 4093 0.68 0.875273
Target:  5'- gGcCGCCCGCGGCCcGgcCgGCGcaGCCu -3'
miRNA:   3'- gCaGUGGGCGCUGGaCaaGgCGC--UGG- -5'
9019 5' -57.7 NC_002512.2 + 4373 0.67 0.906894
Target:  5'- cCGUCcgcgaaGCCCGgGACCc---CCGCGGCg -3'
miRNA:   3'- -GCAG------UGGGCgCUGGacaaGGCGCUGg -5'
9019 5' -57.7 NC_002512.2 + 5355 0.7 0.780954
Target:  5'- gGUCcCCCGgGACCUGUggUCCucCGGCUc -3'
miRNA:   3'- gCAGuGGGCgCUGGACA--AGGc-GCUGG- -5'
9019 5' -57.7 NC_002512.2 + 5540 0.68 0.861241
Target:  5'- --cCGCCCGCGACCccgGcgCgGCG-CCg -3'
miRNA:   3'- gcaGUGGGCGCUGGa--CaaGgCGCuGG- -5'
9019 5' -57.7 NC_002512.2 + 5690 0.67 0.89733
Target:  5'- gCGUC-CCCGCGuCCgugUGUgugugucucucucucUCCGCGcGCCc -3'
miRNA:   3'- -GCAGuGGGCGCuGG---ACA---------------AGGCGC-UGG- -5'
9019 5' -57.7 NC_002512.2 + 7443 0.69 0.831006
Target:  5'- gGUUGgCCGCGGCCcgGgggaagCCGCGGCg -3'
miRNA:   3'- gCAGUgGGCGCUGGa-Caa----GGCGCUGg -5'
9019 5' -57.7 NC_002512.2 + 8423 0.68 0.84647
Target:  5'- aCG-CGCaCCGCGGCCgg-UCgGaCGACCg -3'
miRNA:   3'- -GCaGUG-GGCGCUGGacaAGgC-GCUGG- -5'
9019 5' -57.7 NC_002512.2 + 8632 0.71 0.70785
Target:  5'- gCGUC-CCC-CGACUUccgCCGCGGCCg -3'
miRNA:   3'- -GCAGuGGGcGCUGGAcaaGGCGCUGG- -5'
9019 5' -57.7 NC_002512.2 + 10010 0.68 0.853945
Target:  5'- uCGUCuccgACCC-CGGCCUcGUcacccgUCCGCGAUCc -3'
miRNA:   3'- -GCAG----UGGGcGCUGGA-CA------AGGCGCUGG- -5'
9019 5' -57.7 NC_002512.2 + 10819 0.72 0.679277
Target:  5'- aCGUCgagcucgaaGCCCGCGgggaGCCccGcgCCGCGGCCg -3'
miRNA:   3'- -GCAG---------UGGGCGC----UGGa-CaaGGCGCUGG- -5'
9019 5' -57.7 NC_002512.2 + 11666 0.69 0.831006
Target:  5'- ---gGCgCCGCGGCCcg--CCGCGGCCc -3'
miRNA:   3'- gcagUG-GGCGCUGGacaaGGCGCUGG- -5'
9019 5' -57.7 NC_002512.2 + 12831 0.72 0.640729
Target:  5'- -aUCACCgacaugcagcaCGCGGCCUGcgCCGUGACg -3'
miRNA:   3'- gcAGUGG-----------GCGCUGGACaaGGCGCUGg -5'
9019 5' -57.7 NC_002512.2 + 13475 0.74 0.57328
Target:  5'- gCGUC-CCCG-GACCUG--CUGCGGCCg -3'
miRNA:   3'- -GCAGuGGGCgCUGGACaaGGCGCUGG- -5'
9019 5' -57.7 NC_002512.2 + 14942 0.68 0.861241
Target:  5'- cCGUgCGUCCGCGGCCacgGgaggacgaaCCGCGGCCg -3'
miRNA:   3'- -GCA-GUGGGCGCUGGa--Caa-------GGCGCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.