miRNA display CGI


Results 1 - 20 of 296 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9019 5' -57.7 NC_002512.2 + 167291 1.11 0.003066
Target:  5'- cCGUCACCCGCGACCUGUUCCGCGACCc -3'
miRNA:   3'- -GCAGUGGGCGCUGGACAAGGCGCUGG- -5'
9019 5' -57.7 NC_002512.2 + 227774 0.84 0.157465
Target:  5'- uCGaCGCCCGCGACCgag-CCGCGGCCg -3'
miRNA:   3'- -GCaGUGGGCGCUGGacaaGGCGCUGG- -5'
9019 5' -57.7 NC_002512.2 + 135647 0.82 0.209337
Target:  5'- gGUCGCCgGCGGCCUGa-UCGCGACCc -3'
miRNA:   3'- gCAGUGGgCGCUGGACaaGGCGCUGG- -5'
9019 5' -57.7 NC_002512.2 + 192233 0.82 0.219299
Target:  5'- aCGUCGCCCGCGAgagaUGUUCCGcCGAUCu -3'
miRNA:   3'- -GCAGUGGGCGCUgg--ACAAGGC-GCUGG- -5'
9019 5' -57.7 NC_002512.2 + 126955 0.8 0.275298
Target:  5'- cCGUCGCCUGUuacGACCUGgggcCCGUGGCCg -3'
miRNA:   3'- -GCAGUGGGCG---CUGGACaa--GGCGCUGG- -5'
9019 5' -57.7 NC_002512.2 + 140177 0.8 0.281486
Target:  5'- gGUCACCCGCcACCcGUUCgGCGACa -3'
miRNA:   3'- gCAGUGGGCGcUGGaCAAGgCGCUGg -5'
9019 5' -57.7 NC_002512.2 + 137345 0.79 0.307345
Target:  5'- uCGUCG-CCGCGGCCg---CCGCGGCCg -3'
miRNA:   3'- -GCAGUgGGCGCUGGacaaGGCGCUGG- -5'
9019 5' -57.7 NC_002512.2 + 214249 0.78 0.364389
Target:  5'- uCGcCGCCCGCGGCCgaggaGUUCCGCugucgccuGGCCu -3'
miRNA:   3'- -GCaGUGGGCGCUGGa----CAAGGCG--------CUGG- -5'
9019 5' -57.7 NC_002512.2 + 115941 0.78 0.364389
Target:  5'- aCGUCuuCCGCGGCCUGcUCuCGCuGGCCg -3'
miRNA:   3'- -GCAGugGGCGCUGGACaAG-GCG-CUGG- -5'
9019 5' -57.7 NC_002512.2 + 128014 0.77 0.379749
Target:  5'- -uUCGCCCGCGGCUg---CUGCGGCCg -3'
miRNA:   3'- gcAGUGGGCGCUGGacaaGGCGCUGG- -5'
9019 5' -57.7 NC_002512.2 + 30374 0.77 0.394737
Target:  5'- uGUCGCCCGacgaccuCGACCUGaUCCucGCGGCCc -3'
miRNA:   3'- gCAGUGGGC-------GCUGGACaAGG--CGCUGG- -5'
9019 5' -57.7 NC_002512.2 + 3168 0.77 0.402777
Target:  5'- uCGUCGCCCGCGGCCUcccgucgcucgacGccgCCGCGGgCg -3'
miRNA:   3'- -GCAGUGGGCGCUGGA-------------Caa-GGCGCUgG- -5'
9019 5' -57.7 NC_002512.2 + 91933 0.77 0.411741
Target:  5'- --aCAUCCGCGAgCUGUUCCGCaGGCa -3'
miRNA:   3'- gcaGUGGGCGCUgGACAAGGCG-CUGg -5'
9019 5' -57.7 NC_002512.2 + 180734 0.76 0.445349
Target:  5'- gCGUCAUCUGguaGGCCUGUaccgcgUCCGCGAUCu -3'
miRNA:   3'- -GCAGUGGGCg--CUGGACA------AGGCGCUGG- -5'
9019 5' -57.7 NC_002512.2 + 146918 0.76 0.453989
Target:  5'- aCGUCuuCCGCG-CCgUGcgCCGCGACCu -3'
miRNA:   3'- -GCAGugGGCGCuGG-ACaaGGCGCUGG- -5'
9019 5' -57.7 NC_002512.2 + 108009 0.75 0.48942
Target:  5'- gCGUCcCCCGCGACCUcccccucgGaUCCGCcGCCg -3'
miRNA:   3'- -GCAGuGGGCGCUGGA--------CaAGGCGcUGG- -5'
9019 5' -57.7 NC_002512.2 + 142018 0.75 0.49848
Target:  5'- cCGUCucuUCCGCGGCCggGggCCGgCGACCc -3'
miRNA:   3'- -GCAGu--GGGCGCUGGa-CaaGGC-GCUGG- -5'
9019 5' -57.7 NC_002512.2 + 216192 0.75 0.507615
Target:  5'- uCG-CGCCCGUGAUCaccgCCGCGGCCg -3'
miRNA:   3'- -GCaGUGGGCGCUGGacaaGGCGCUGG- -5'
9019 5' -57.7 NC_002512.2 + 220517 0.75 0.507615
Target:  5'- gCGUCGCCCGgGACCUGgaggagcugCUGCGcgagggcgucacGCCg -3'
miRNA:   3'- -GCAGUGGGCgCUGGACaa-------GGCGC------------UGG- -5'
9019 5' -57.7 NC_002512.2 + 143754 0.75 0.516819
Target:  5'- gCGUCGgcuuccaggUCCGCGACCUccUCCGCGcCCg -3'
miRNA:   3'- -GCAGU---------GGGCGCUGGAcaAGGCGCuGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.