miRNA display CGI


Results 1 - 20 of 296 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9019 5' -57.7 NC_002512.2 + 126381 0.72 0.660043
Target:  5'- gGUCACCaaCGCGcuGCCcGgcgagcggUCCGCGGCCg -3'
miRNA:   3'- gCAGUGG--GCGC--UGGaCa-------AGGCGCUGG- -5'
9019 5' -57.7 NC_002512.2 + 24839 0.74 0.582851
Target:  5'- gGUCcggGCCCGCGGCCgg-UCgGCGGCg -3'
miRNA:   3'- gCAG---UGGGCGCUGGacaAGgCGCUGg -5'
9019 5' -57.7 NC_002512.2 + 133662 0.73 0.611729
Target:  5'- gGUCGCCgccgccgcCGCGGCCg---CCGUGGCCg -3'
miRNA:   3'- gCAGUGG--------GCGCUGGacaaGGCGCUGG- -5'
9019 5' -57.7 NC_002512.2 + 104047 0.73 0.611729
Target:  5'- cCGUUAUCCGCGACCgga--CGgGACCu -3'
miRNA:   3'- -GCAGUGGGCGCUGGacaagGCgCUGG- -5'
9019 5' -57.7 NC_002512.2 + 38940 0.73 0.621391
Target:  5'- gCGggCGCCCGCGugCgcccgggucugGUUCCGCuGCCu -3'
miRNA:   3'- -GCa-GUGGGCGCugGa----------CAAGGCGcUGG- -5'
9019 5' -57.7 NC_002512.2 + 15068 0.73 0.63106
Target:  5'- uCGUCA-CCGCGACuCUcGgagacggaccUCCGCGACCa -3'
miRNA:   3'- -GCAGUgGGCGCUG-GA-Ca---------AGGCGCUGG- -5'
9019 5' -57.7 NC_002512.2 + 118189 0.73 0.63106
Target:  5'- uCGUCAUCCGCGACC----CCGaGGCCg -3'
miRNA:   3'- -GCAGUGGGCGCUGGacaaGGCgCUGG- -5'
9019 5' -57.7 NC_002512.2 + 99073 0.72 0.637829
Target:  5'- cCGUCACCggaaccucggccacCGCGugCUGcgcgUCgGCGGCCc -3'
miRNA:   3'- -GCAGUGG--------------GCGCugGACa---AGgCGCUGG- -5'
9019 5' -57.7 NC_002512.2 + 12831 0.72 0.640729
Target:  5'- -aUCACCgacaugcagcaCGCGGCCUGcgCCGUGACg -3'
miRNA:   3'- gcAGUGG-----------GCGCUGGACaaGGCGCUGg -5'
9019 5' -57.7 NC_002512.2 + 13475 0.74 0.57328
Target:  5'- gCGUC-CCCG-GACCUG--CUGCGGCCg -3'
miRNA:   3'- -GCAGuGGGCgCUGGACaaGGCGCUGG- -5'
9019 5' -57.7 NC_002512.2 + 39800 0.74 0.563747
Target:  5'- gGUCccgcagccgaGCCCGCuGACCgg--CCGCGGCCa -3'
miRNA:   3'- gCAG----------UGGGCG-CUGGacaaGGCGCUGG- -5'
9019 5' -57.7 NC_002512.2 + 140470 0.74 0.554256
Target:  5'- cCGaCGCCCGaGGCCUgGUUCCGCGcgaACCu -3'
miRNA:   3'- -GCaGUGGGCgCUGGA-CAAGGCGC---UGG- -5'
9019 5' -57.7 NC_002512.2 + 126955 0.8 0.275298
Target:  5'- cCGUCGCCUGUuacGACCUGgggcCCGUGGCCg -3'
miRNA:   3'- -GCAGUGGGCG---CUGGACaa--GGCGCUGG- -5'
9019 5' -57.7 NC_002512.2 + 137345 0.79 0.307345
Target:  5'- uCGUCG-CCGCGGCCg---CCGCGGCCg -3'
miRNA:   3'- -GCAGUgGGCGCUGGacaaGGCGCUGG- -5'
9019 5' -57.7 NC_002512.2 + 115941 0.78 0.364389
Target:  5'- aCGUCuuCCGCGGCCUGcUCuCGCuGGCCg -3'
miRNA:   3'- -GCAGugGGCGCUGGACaAG-GCG-CUGG- -5'
9019 5' -57.7 NC_002512.2 + 128014 0.77 0.379749
Target:  5'- -uUCGCCCGCGGCUg---CUGCGGCCg -3'
miRNA:   3'- gcAGUGGGCGCUGGacaaGGCGCUGG- -5'
9019 5' -57.7 NC_002512.2 + 30374 0.77 0.394737
Target:  5'- uGUCGCCCGacgaccuCGACCUGaUCCucGCGGCCc -3'
miRNA:   3'- gCAGUGGGC-------GCUGGACaAGG--CGCUGG- -5'
9019 5' -57.7 NC_002512.2 + 3168 0.77 0.402777
Target:  5'- uCGUCGCCCGCGGCCUcccgucgcucgacGccgCCGCGGgCg -3'
miRNA:   3'- -GCAGUGGGCGCUGGA-------------Caa-GGCGCUgG- -5'
9019 5' -57.7 NC_002512.2 + 142018 0.75 0.49848
Target:  5'- cCGUCucuUCCGCGGCCggGggCCGgCGACCc -3'
miRNA:   3'- -GCAGu--GGGCGCUGGa-CaaGGC-GCUGG- -5'
9019 5' -57.7 NC_002512.2 + 54108 0.74 0.535423
Target:  5'- uGUCgGCCUGCGACgugaccaccccgCUGUUCCGCuGCCu -3'
miRNA:   3'- gCAG-UGGGCGCUG------------GACAAGGCGcUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.