miRNA display CGI


Results 1 - 20 of 296 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9019 5' -57.7 NC_002512.2 + 172692 0.66 0.946584
Target:  5'- cCGUCcUgCGCGACCgcugCCGCGAg- -3'
miRNA:   3'- -GCAGuGgGCGCUGGacaaGGCGCUgg -5'
9019 5' -57.7 NC_002512.2 + 165999 0.66 0.937936
Target:  5'- uCGUCAacucuCCCGaCGGCUccggggacgcGUUCgGCGGCCg -3'
miRNA:   3'- -GCAGU-----GGGC-GCUGGa---------CAAGgCGCUGG- -5'
9019 5' -57.7 NC_002512.2 + 75910 0.66 0.937936
Target:  5'- uGUUugCCGCcGCCgGcgCCGCcgGACCc -3'
miRNA:   3'- gCAGugGGCGcUGGaCaaGGCG--CUGG- -5'
9019 5' -57.7 NC_002512.2 + 167291 1.11 0.003066
Target:  5'- cCGUCACCCGCGACCUGUUCCGCGACCc -3'
miRNA:   3'- -GCAGUGGGCGCUGGACAAGGCGCUGG- -5'
9019 5' -57.7 NC_002512.2 + 78304 0.66 0.946584
Target:  5'- uCGUCucguuUCCGCGACUgcga--GCGACCg -3'
miRNA:   3'- -GCAGu----GGGCGCUGGacaaggCGCUGG- -5'
9019 5' -57.7 NC_002512.2 + 129726 0.66 0.946584
Target:  5'- uGUCGauCCCGC--CCUGUUgUCGuCGACCg -3'
miRNA:   3'- gCAGU--GGGCGcuGGACAA-GGC-GCUGG- -5'
9019 5' -57.7 NC_002512.2 + 98121 0.66 0.942365
Target:  5'- cCGcUugCCGgGGCgCUGgucgUCGCGGCCg -3'
miRNA:   3'- -GCaGugGGCgCUG-GACaa--GGCGCUGG- -5'
9019 5' -57.7 NC_002512.2 + 225818 0.66 0.942365
Target:  5'- gGUgGCCUGgGACCUcGagCCGCGggggaucgaGCCg -3'
miRNA:   3'- gCAgUGGGCgCUGGA-CaaGGCGC---------UGG- -5'
9019 5' -57.7 NC_002512.2 + 153203 0.66 0.942365
Target:  5'- gCGgCACCCGgGACCcGUcCCGCc-CCg -3'
miRNA:   3'- -GCaGUGGGCgCUGGaCAaGGCGcuGG- -5'
9019 5' -57.7 NC_002512.2 + 212447 0.66 0.937936
Target:  5'- gGcCGgCCGCGACCg---CCGCGAg- -3'
miRNA:   3'- gCaGUgGGCGCUGGacaaGGCGCUgg -5'
9019 5' -57.7 NC_002512.2 + 94427 0.66 0.942365
Target:  5'- aGUCGgCCGCGucgaacGCCUGguggacggCCuCGGCCa -3'
miRNA:   3'- gCAGUgGGCGC------UGGACaa------GGcGCUGG- -5'
9019 5' -57.7 NC_002512.2 + 197801 0.66 0.942365
Target:  5'- --aCACCCG-GGCCgccaUCgGCGACCc -3'
miRNA:   3'- gcaGUGGGCgCUGGaca-AGgCGCUGG- -5'
9019 5' -57.7 NC_002512.2 + 186284 0.66 0.946584
Target:  5'- cCG-CAgccUCCGCGuCCUcgUCCGCGACg -3'
miRNA:   3'- -GCaGU---GGGCGCuGGAcaAGGCGCUGg -5'
9019 5' -57.7 NC_002512.2 + 220864 0.66 0.941059
Target:  5'- aCGUCGUCCGCGggGCCUcggcgcucuccaucGUggCCGaCGACCu -3'
miRNA:   3'- -GCAGUGGGCGC--UGGA--------------CAa-GGC-GCUGG- -5'
9019 5' -57.7 NC_002512.2 + 182056 0.66 0.946584
Target:  5'- uGUCggccaGCCgCGcCGACCUcagCCGCGGCUc -3'
miRNA:   3'- gCAG-----UGG-GC-GCUGGAcaaGGCGCUGG- -5'
9019 5' -57.7 NC_002512.2 + 221019 0.66 0.942365
Target:  5'- uGUCACCaCGCGGCCaccaacgggGUgCCGCccGGCa -3'
miRNA:   3'- gCAGUGG-GCGCUGGa--------CAaGGCG--CUGg -5'
9019 5' -57.7 NC_002512.2 + 219415 0.66 0.939733
Target:  5'- gCGaCGCCCacgcccggggcggcgGCGGCCUccUCCGCGcCCc -3'
miRNA:   3'- -GCaGUGGG---------------CGCUGGAcaAGGCGCuGG- -5'
9019 5' -57.7 NC_002512.2 + 140844 0.66 0.937936
Target:  5'- uCGUCGCCCucugaaagugcGCGGCCUG---CGCGAa- -3'
miRNA:   3'- -GCAGUGGG-----------CGCUGGACaagGCGCUgg -5'
9019 5' -57.7 NC_002512.2 + 163511 0.66 0.946584
Target:  5'- -uUCACCUaCGACauccUCCGCGACUa -3'
miRNA:   3'- gcAGUGGGcGCUGgacaAGGCGCUGG- -5'
9019 5' -57.7 NC_002512.2 + 194936 0.66 0.946171
Target:  5'- gGUCGCggccgcuCCGCucCCcGUcgCCGCGACCc -3'
miRNA:   3'- gCAGUG-------GGCGcuGGaCAa-GGCGCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.