miRNA display CGI


Results 1 - 20 of 296 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9019 5' -57.7 NC_002512.2 + 129447 0.66 0.937936
Target:  5'- cCGUCGCCCGgaaGACCUGcgaggcccUCgGaCGACa -3'
miRNA:   3'- -GCAGUGGGCg--CUGGACa-------AGgC-GCUGg -5'
9019 5' -57.7 NC_002512.2 + 3111 0.66 0.946584
Target:  5'- gCGUCGCCCGagaCGuCCUcgcccUCCGCGucguCCg -3'
miRNA:   3'- -GCAGUGGGC---GCuGGAca---AGGCGCu---GG- -5'
9019 5' -57.7 NC_002512.2 + 1673 0.66 0.933295
Target:  5'- cCGUCucGCCCG--GCCUcgaCCGCGGCCu -3'
miRNA:   3'- -GCAG--UGGGCgcUGGAcaaGGCGCUGG- -5'
9019 5' -57.7 NC_002512.2 + 98656 0.66 0.946584
Target:  5'- gGcCA-CCGCGGCCUccgaCCGCGACg -3'
miRNA:   3'- gCaGUgGGCGCUGGAcaa-GGCGCUGg -5'
9019 5' -57.7 NC_002512.2 + 45242 0.66 0.933295
Target:  5'- gCGgCGCCCGCGGaCUcg-CCGuCGGCCg -3'
miRNA:   3'- -GCaGUGGGCGCUgGAcaaGGC-GCUGG- -5'
9019 5' -57.7 NC_002512.2 + 69553 0.66 0.946584
Target:  5'- uCGUCACCC-CGACgUG--CCGCacGAUCa -3'
miRNA:   3'- -GCAGUGGGcGCUGgACaaGGCG--CUGG- -5'
9019 5' -57.7 NC_002512.2 + 220671 0.66 0.923374
Target:  5'- --aCACCuCGUuccggaGCCUGUUCCGC-ACCg -3'
miRNA:   3'- gcaGUGG-GCGc-----UGGACAAGGCGcUGG- -5'
9019 5' -57.7 NC_002512.2 + 78966 0.66 0.946584
Target:  5'- aGUCcgGCUCG-GACUUagcGUcgUCCGCGGCCg -3'
miRNA:   3'- gCAG--UGGGCgCUGGA---CA--AGGCGCUGG- -5'
9019 5' -57.7 NC_002512.2 + 25124 0.66 0.937936
Target:  5'- uCGUC-CCCGCGcCCcaggCCGgGAUCg -3'
miRNA:   3'- -GCAGuGGGCGCuGGacaaGGCgCUGG- -5'
9019 5' -57.7 NC_002512.2 + 59595 0.66 0.933295
Target:  5'- --aCAUCCaguuCGAcaaCCUGUUCCGCGAgCg -3'
miRNA:   3'- gcaGUGGGc---GCU---GGACAAGGCGCUgG- -5'
9019 5' -57.7 NC_002512.2 + 108966 0.66 0.933295
Target:  5'- gGUCGCCCGgGuCCgucagcaGggCCGUGuACCu -3'
miRNA:   3'- gCAGUGGGCgCuGGa------CaaGGCGC-UGG- -5'
9019 5' -57.7 NC_002512.2 + 83028 0.66 0.942365
Target:  5'- aGUgGCCCcgcGCGAgcucgagcacCCUGggCCagGCGACCu -3'
miRNA:   3'- gCAgUGGG---CGCU----------GGACaaGG--CGCUGG- -5'
9019 5' -57.7 NC_002512.2 + 157506 0.66 0.926943
Target:  5'- gCGUC-CaCCGCGACCagacgaucaucauaUGaaaUCCGCgGGCCg -3'
miRNA:   3'- -GCAGuG-GGCGCUGG--------------ACa--AGGCG-CUGG- -5'
9019 5' -57.7 NC_002512.2 + 39676 0.66 0.942365
Target:  5'- cCGUC-CCgGaCGACCgcg-CCGcCGACCu -3'
miRNA:   3'- -GCAGuGGgC-GCUGGacaaGGC-GCUGG- -5'
9019 5' -57.7 NC_002512.2 + 101459 0.66 0.933295
Target:  5'- gGcCGCCCGCGAggaggGcUCCGgCGACCc -3'
miRNA:   3'- gCaGUGGGCGCUgga--CaAGGC-GCUGG- -5'
9019 5' -57.7 NC_002512.2 + 136105 0.66 0.923374
Target:  5'- cCGUCACCCGau-CCgc-UCC-CGACCu -3'
miRNA:   3'- -GCAGUGGGCgcuGGacaAGGcGCUGG- -5'
9019 5' -57.7 NC_002512.2 + 76508 0.66 0.946584
Target:  5'- aCGUCGCuCCG-GACCgccagCCGCcGCCc -3'
miRNA:   3'- -GCAGUG-GGCgCUGGacaa-GGCGcUGG- -5'
9019 5' -57.7 NC_002512.2 + 190322 0.66 0.927445
Target:  5'- uGUCGCCCGUcGCCgcccuuggcaccGUcCCGCGuCCu -3'
miRNA:   3'- gCAGUGGGCGcUGGa-----------CAaGGCGCuGG- -5'
9019 5' -57.7 NC_002512.2 + 226121 0.66 0.942365
Target:  5'- gCGUCaggacaACCCGaGACgUG-UCCGUGAUCu -3'
miRNA:   3'- -GCAG------UGGGCgCUGgACaAGGCGCUGG- -5'
9019 5' -57.7 NC_002512.2 + 151533 0.66 0.941932
Target:  5'- gGUCGCuuGCGGaacgccgaCUGacgaaccUUCCGCGGuCCg -3'
miRNA:   3'- gCAGUGggCGCUg-------GAC-------AAGGCGCU-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.