miRNA display CGI


Results 1 - 20 of 296 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9019 5' -57.7 NC_002512.2 + 229826 0.71 0.71727
Target:  5'- uCG-CGCCCGCGACCgacgCCGCaaaGCCc -3'
miRNA:   3'- -GCaGUGGGCGCUGGacaaGGCGc--UGG- -5'
9019 5' -57.7 NC_002512.2 + 227774 0.84 0.157465
Target:  5'- uCGaCGCCCGCGACCgag-CCGCGGCCg -3'
miRNA:   3'- -GCaGUGGGCGCUGGacaaGGCGCUGG- -5'
9019 5' -57.7 NC_002512.2 + 227075 0.71 0.71727
Target:  5'- cCG-CGCCCGCG-CCggGUcCCGcCGGCCg -3'
miRNA:   3'- -GCaGUGGGCGCuGGa-CAaGGC-GCUGG- -5'
9019 5' -57.7 NC_002512.2 + 226696 0.72 0.669674
Target:  5'- cCGUCGCCCGCGGCggcgUCgaGCGACg -3'
miRNA:   3'- -GCAGUGGGCGCUGgacaAGg-CGCUGg -5'
9019 5' -57.7 NC_002512.2 + 226299 0.71 0.726625
Target:  5'- uGUCcccgagaccCCCGgGGCCUGUgggCCGUGGCUc -3'
miRNA:   3'- gCAGu--------GGGCgCUGGACAa--GGCGCUGG- -5'
9019 5' -57.7 NC_002512.2 + 226121 0.66 0.942365
Target:  5'- gCGUCaggacaACCCGaGACgUG-UCCGUGAUCu -3'
miRNA:   3'- -GCAG------UGGGCgCUGgACaAGGCGCUGG- -5'
9019 5' -57.7 NC_002512.2 + 225818 0.66 0.942365
Target:  5'- gGUgGCCUGgGACCUcGagCCGCGggggaucgaGCCg -3'
miRNA:   3'- gCAgUGGGCgCUGGA-CaaGGCGC---------UGG- -5'
9019 5' -57.7 NC_002512.2 + 225719 0.74 0.563747
Target:  5'- uGUCGCCCGCGAgCCg---CgGCGACUc -3'
miRNA:   3'- gCAGUGGGCGCU-GGacaaGgCGCUGG- -5'
9019 5' -57.7 NC_002512.2 + 225291 0.67 0.888529
Target:  5'- cCGUCucgcgGCCCGCGgcgccGCCUccUCCGCcGCCc -3'
miRNA:   3'- -GCAG-----UGGGCGC-----UGGAcaAGGCGcUGG- -5'
9019 5' -57.7 NC_002512.2 + 224682 0.68 0.875273
Target:  5'- cCGUCggcugGCCCGCGGuCCUGc-CCGCccugcuggGGCCg -3'
miRNA:   3'- -GCAG-----UGGGCGCU-GGACaaGGCG--------CUGG- -5'
9019 5' -57.7 NC_002512.2 + 224632 0.67 0.894857
Target:  5'- gGUCGCcgCCGCGGCCUcGgccuaCGCGcCCg -3'
miRNA:   3'- gCAGUG--GGCGCUGGA-Caag--GCGCuGG- -5'
9019 5' -57.7 NC_002512.2 + 223791 0.68 0.861241
Target:  5'- aCGUCGCCgGgGACgUcggCgGCGACCg -3'
miRNA:   3'- -GCAGUGGgCgCUGgAcaaGgCGCUGG- -5'
9019 5' -57.7 NC_002512.2 + 223536 0.72 0.660043
Target:  5'- aCG-CGCCCGCGGCCcgcgGccCCGCGcCCg -3'
miRNA:   3'- -GCaGUGGGCGCUGGa---CaaGGCGCuGG- -5'
9019 5' -57.7 NC_002512.2 + 223067 0.72 0.686935
Target:  5'- gGUCGCCacCGUGGCCgagacccgggUCCGCGGCUg -3'
miRNA:   3'- gCAGUGG--GCGCUGGaca-------AGGCGCUGG- -5'
9019 5' -57.7 NC_002512.2 + 222502 0.68 0.868352
Target:  5'- gGcCGCCUucuGCG-CCUGgccgcccgCCGCGGCCg -3'
miRNA:   3'- gCaGUGGG---CGCuGGACaa------GGCGCUGG- -5'
9019 5' -57.7 NC_002512.2 + 222432 0.72 0.650393
Target:  5'- aGcCGCgCCGCGGCUUcccccGggCCGCGGCCa -3'
miRNA:   3'- gCaGUG-GGCGCUGGA-----CaaGGCGCUGG- -5'
9019 5' -57.7 NC_002512.2 + 222252 0.68 0.874589
Target:  5'- aCGUCuCCCauuggccuccacgGUGACCaaacGcgCCGCGACCg -3'
miRNA:   3'- -GCAGuGGG-------------CGCUGGa---CaaGGCGCUGG- -5'
9019 5' -57.7 NC_002512.2 + 221834 0.68 0.853945
Target:  5'- gCGUCcgACCCGCGggggcGCCUcgGgaCCGgGACCu -3'
miRNA:   3'- -GCAG--UGGGCGC-----UGGA--CaaGGCgCUGG- -5'
9019 5' -57.7 NC_002512.2 + 221559 0.68 0.871143
Target:  5'- ---gACCCGCGGucuccggcucccggcCCUGcUCCGuCGACCc -3'
miRNA:   3'- gcagUGGGCGCU---------------GGACaAGGC-GCUGG- -5'
9019 5' -57.7 NC_002512.2 + 221019 0.66 0.942365
Target:  5'- uGUCACCaCGCGGCCaccaacgggGUgCCGCccGGCa -3'
miRNA:   3'- gCAGUGG-GCGCUGGa--------CAaGGCG--CUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.