Results 1 - 20 of 34 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9025 | 3' | -59.3 | NC_002512.2 | + | 227711 | 0.73 | 0.503804 |
Target: 5'- cGGGGGC-----GCGGUACgGUCCCCGa -3' miRNA: 3'- aCCCCCGgaacaCGCUAUG-CAGGGGC- -5' |
|||||||
9025 | 3' | -59.3 | NC_002512.2 | + | 222421 | 0.67 | 0.812785 |
Target: 5'- cGGGGGCCggcagccGCGccGCGgcuucCCCCGg -3' miRNA: 3'- aCCCCCGGaaca---CGCuaUGCa----GGGGC- -5' |
|||||||
9025 | 3' | -59.3 | NC_002512.2 | + | 210849 | 0.66 | 0.866074 |
Target: 5'- cUGGGGGCUgcuccGCGAgaucgagUGCGUgCCCu -3' miRNA: 3'- -ACCCCCGGaaca-CGCU-------AUGCAgGGGc -5' |
|||||||
9025 | 3' | -59.3 | NC_002512.2 | + | 204735 | 0.67 | 0.812785 |
Target: 5'- gGGGGGCCggacccggGUGCucaGCGaUCCCGg -3' miRNA: 3'- aCCCCCGGaa------CACGcuaUGCaGGGGC- -5' |
|||||||
9025 | 3' | -59.3 | NC_002512.2 | + | 198698 | 0.67 | 0.804427 |
Target: 5'- gGGGGGuUCUUcggacGUcgaggucaccagGCGGUGCGUCuCCCGg -3' miRNA: 3'- aCCCCC-GGAA-----CA------------CGCUAUGCAG-GGGC- -5' |
|||||||
9025 | 3' | -59.3 | NC_002512.2 | + | 193826 | 0.69 | 0.72378 |
Target: 5'- -cGGGGUCg---GCGAUaaaagucgggGCGUCCCCGc -3' miRNA: 3'- acCCCCGGaacaCGCUA----------UGCAGGGGC- -5' |
|||||||
9025 | 3' | -59.3 | NC_002512.2 | + | 177432 | 0.66 | 0.879913 |
Target: 5'- gGGGGGUCUuuauUGUGgaGAUAgGUcaccucugaucaaCCCCGa -3' miRNA: 3'- aCCCCCGGA----ACACg-CUAUgCA-------------GGGGC- -5' |
|||||||
9025 | 3' | -59.3 | NC_002512.2 | + | 165655 | 0.68 | 0.778538 |
Target: 5'- cGGGGGCCUUcc-CGAggccgAgGUCCUCGa -3' miRNA: 3'- aCCCCCGGAAcacGCUa----UgCAGGGGC- -5' |
|||||||
9025 | 3' | -59.3 | NC_002512.2 | + | 159922 | 1.09 | 0.002392 |
Target: 5'- cUGGGGGCCUUGUGCGAUACGUCCCCGg -3' miRNA: 3'- -ACCCCCGGAACACGCUAUGCAGGGGC- -5' |
|||||||
9025 | 3' | -59.3 | NC_002512.2 | + | 152694 | 0.68 | 0.787296 |
Target: 5'- aGGGGGCCUccu-CGAU-CGUCCgCGa -3' miRNA: 3'- aCCCCCGGAacacGCUAuGCAGGgGC- -5' |
|||||||
9025 | 3' | -59.3 | NC_002512.2 | + | 152681 | 0.68 | 0.742401 |
Target: 5'- -uGGGGCCggcgGcCGGUcucgucGCGUCCCCGg -3' miRNA: 3'- acCCCCGGaacaC-GCUA------UGCAGGGGC- -5' |
|||||||
9025 | 3' | -59.3 | NC_002512.2 | + | 136085 | 0.71 | 0.617929 |
Target: 5'- gGGGGGCCggcUGCGGacgccCGUCaCCCGa -3' miRNA: 3'- aCCCCCGGaacACGCUau---GCAG-GGGC- -5' |
|||||||
9025 | 3' | -59.3 | NC_002512.2 | + | 128580 | 0.67 | 0.836946 |
Target: 5'- cGGGGGCCgacccUGCGAgaggccgggACGUCCg-- -3' miRNA: 3'- aCCCCCGGaac--ACGCUa--------UGCAGGggc -5' |
|||||||
9025 | 3' | -59.3 | NC_002512.2 | + | 126919 | 0.67 | 0.829052 |
Target: 5'- gGGGaGGCCgggcUG-GCGAUACccgcccgcgCCCCGg -3' miRNA: 3'- aCCC-CCGGa---ACaCGCUAUGca-------GGGGC- -5' |
|||||||
9025 | 3' | -59.3 | NC_002512.2 | + | 116896 | 0.72 | 0.52045 |
Target: 5'- gGcGGGGCCggG-GCGGgcuccucggacgGCGUCCCCGg -3' miRNA: 3'- aC-CCCCGGaaCaCGCUa-----------UGCAGGGGC- -5' |
|||||||
9025 | 3' | -59.3 | NC_002512.2 | + | 114805 | 0.68 | 0.778538 |
Target: 5'- cGGGuGGCCagGcgccGCGcgACGUUCCCGu -3' miRNA: 3'- aCCC-CCGGaaCa---CGCuaUGCAGGGGC- -5' |
|||||||
9025 | 3' | -59.3 | NC_002512.2 | + | 108441 | 0.67 | 0.795928 |
Target: 5'- cGGGGGCCgg--GgGGUcCcUCCCCGg -3' miRNA: 3'- aCCCCCGGaacaCgCUAuGcAGGGGC- -5' |
|||||||
9025 | 3' | -59.3 | NC_002512.2 | + | 101705 | 0.66 | 0.852225 |
Target: 5'- cGGcGGCCcgcucgGCGAccuCGUCCCCGg -3' miRNA: 3'- aCCcCCGGaaca--CGCUau-GCAGGGGC- -5' |
|||||||
9025 | 3' | -59.3 | NC_002512.2 | + | 95710 | 0.67 | 0.804427 |
Target: 5'- gGGGGGCCgggagGgGAagACGgcUCCCCGu -3' miRNA: 3'- aCCCCCGGaaca-CgCUa-UGC--AGGGGC- -5' |
|||||||
9025 | 3' | -59.3 | NC_002512.2 | + | 95682 | 0.69 | 0.694378 |
Target: 5'- aGGGGGCCUUcagGuCGAUcucccgcACGUCgCCGa -3' miRNA: 3'- aCCCCCGGAAca-C-GCUA-------UGCAGgGGC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home