Results 1 - 20 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9025 | 3' | -59.3 | NC_002512.2 | + | 136085 | 0.71 | 0.617929 |
Target: 5'- gGGGGGCCggcUGCGGacgccCGUCaCCCGa -3' miRNA: 3'- aCCCCCGGaacACGCUau---GCAG-GGGC- -5' |
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9025 | 3' | -59.3 | NC_002512.2 | + | 177432 | 0.66 | 0.879913 |
Target: 5'- gGGGGGUCUuuauUGUGgaGAUAgGUcaccucugaucaaCCCCGa -3' miRNA: 3'- aCCCCCGGA----ACACg-CUAUgCA-------------GGGGC- -5' |
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9025 | 3' | -59.3 | NC_002512.2 | + | 41193 | 0.66 | 0.873782 |
Target: 5'- cGGaGGaGCCgcc-GUGAU-CGUCCCCGa -3' miRNA: 3'- aCC-CC-CGGaacaCGCUAuGCAGGGGC- -5' |
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9025 | 3' | -59.3 | NC_002512.2 | + | 80254 | 0.66 | 0.866785 |
Target: 5'- gGGccGGGCUccGUGCGGU-CcUCCCCGg -3' miRNA: 3'- aCC--CCCGGaaCACGCUAuGcAGGGGC- -5' |
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9025 | 3' | -59.3 | NC_002512.2 | + | 42615 | 0.66 | 0.866785 |
Target: 5'- cGGGGGCaCUUcgagGCGA--CGUCCgCCa -3' miRNA: 3'- aCCCCCG-GAAca--CGCUauGCAGG-GGc -5' |
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9025 | 3' | -59.3 | NC_002512.2 | + | 57221 | 0.66 | 0.859597 |
Target: 5'- cGaGGGCCgagacGCGG-GCGUCCCCGc -3' miRNA: 3'- aCcCCCGGaaca-CGCUaUGCAGGGGC- -5' |
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9025 | 3' | -59.3 | NC_002512.2 | + | 2494 | 0.66 | 0.844672 |
Target: 5'- cGGGcGGCCUUG-GgGA-ACGgaucucCCCCGa -3' miRNA: 3'- aCCC-CCGGAACaCgCUaUGCa-----GGGGC- -5' |
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9025 | 3' | -59.3 | NC_002512.2 | + | 128580 | 0.67 | 0.836946 |
Target: 5'- cGGGGGCCgacccUGCGAgaggccgggACGUCCg-- -3' miRNA: 3'- aCCCCCGGaac--ACGCUa--------UGCAGGggc -5' |
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9025 | 3' | -59.3 | NC_002512.2 | + | 29755 | 0.67 | 0.832229 |
Target: 5'- aGGGGGCCcgGcgaucgacgcgacgGCGAUGCugaaGUaCCCCGg -3' miRNA: 3'- aCCCCCGGaaCa-------------CGCUAUG----CA-GGGGC- -5' |
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9025 | 3' | -59.3 | NC_002512.2 | + | 152694 | 0.68 | 0.787296 |
Target: 5'- aGGGGGCCUccu-CGAU-CGUCCgCGa -3' miRNA: 3'- aCCCCCGGAacacGCUAuGCAGGgGC- -5' |
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9025 | 3' | -59.3 | NC_002512.2 | + | 114805 | 0.68 | 0.778538 |
Target: 5'- cGGGuGGCCagGcgccGCGcgACGUUCCCGu -3' miRNA: 3'- aCCC-CCGGaaCa---CGCuaUGCAGGGGC- -5' |
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9025 | 3' | -59.3 | NC_002512.2 | + | 82003 | 0.68 | 0.778538 |
Target: 5'- cGGGGGCggucgcgGCGAgcCGUCgCCCGg -3' miRNA: 3'- aCCCCCGgaaca--CGCUauGCAG-GGGC- -5' |
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9025 | 3' | -59.3 | NC_002512.2 | + | 13575 | 0.69 | 0.714359 |
Target: 5'- -cGGGGCCgcagaUGcagGUGAcccACGUCCCCGg -3' miRNA: 3'- acCCCCGGa----ACa--CGCUa--UGCAGGGGC- -5' |
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9025 | 3' | -59.3 | NC_002512.2 | + | 71016 | 0.69 | 0.702971 |
Target: 5'- gGGGGGCCgccgccggccgGUcGaCGAcgACGUCCCCc -3' miRNA: 3'- aCCCCCGGaa---------CA-C-GCUa-UGCAGGGGc -5' |
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9025 | 3' | -59.3 | NC_002512.2 | + | 95682 | 0.69 | 0.694378 |
Target: 5'- aGGGGGCCUUcagGuCGAUcucccgcACGUCgCCGa -3' miRNA: 3'- aCCCCCGGAAca-C-GCUA-------UGCAGgGGC- -5' |
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9025 | 3' | -59.3 | NC_002512.2 | + | 13457 | 0.69 | 0.685748 |
Target: 5'- aGGGcGGCg----GCGAgccugGCGUCCCCGg -3' miRNA: 3'- aCCC-CCGgaacaCGCUa----UGCAGGGGC- -5' |
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9025 | 3' | -59.3 | NC_002512.2 | + | 45803 | 0.7 | 0.656775 |
Target: 5'- cGGGGGCCgUGcUGCGGUuccuuGCGagacaUCUCCGa -3' miRNA: 3'- aCCCCCGGaAC-ACGCUA-----UGC-----AGGGGC- -5' |
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9025 | 3' | -59.3 | NC_002512.2 | + | 116896 | 0.72 | 0.52045 |
Target: 5'- gGcGGGGCCggG-GCGGgcuccucggacgGCGUCCCCGg -3' miRNA: 3'- aC-CCCCGGaaCaCGCUa-----------UGCAGGGGC- -5' |
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9025 | 3' | -59.3 | NC_002512.2 | + | 210849 | 0.66 | 0.866074 |
Target: 5'- cUGGGGGCUgcuccGCGAgaucgagUGCGUgCCCu -3' miRNA: 3'- -ACCCCCGGaaca-CGCU-------AUGCAgGGGc -5' |
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9025 | 3' | -59.3 | NC_002512.2 | + | 38105 | 0.66 | 0.859597 |
Target: 5'- gUGGGaaucucuGCCUgucacggGCGAUcCGUCCCCGu -3' miRNA: 3'- -ACCCc------CGGAaca----CGCUAuGCAGGGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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